Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_O15
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077 31 0.64
06_01_0762 + 5699619-5699744,5699831-5699891,5699979-5700078,570... 31 0.85
11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989 30 1.5
03_05_0620 - 26196597-26196841,26196929-26197020,26197118-26197296 29 2.0
06_03_0247 + 18679278-18679319,18679522-18679620,18679897-186801... 28 4.5
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 27 7.9
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 27 7.9
05_03_0042 - 7675244-7675846,7675946-7676101,7676444-7676511,768... 27 7.9
04_04_0720 - 27543998-27544230,27544339-27544432,27544571-275448... 27 7.9
>12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077
Length = 371
Score = 31.1 bits (67), Expect = 0.64
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Frame = +2
Query: 365 KILEEAMETDQDNLIEKVRGIYGF--KVKNGPNGAEGYWV-INAKEGK 499
KIL ++T + + IE+V ++GF +K P G G+WV ++AK GK
Sbjct: 236 KILRYWIKTPKASTIEEVVQLHGFPDNIKMSPRG--GFWVGLHAKRGK 281
>06_01_0762 +
5699619-5699744,5699831-5699891,5699979-5700078,
5700436-5700560,5700631-5700706,5701122-5701164
Length = 176
Score = 30.7 bits (66), Expect = 0.85
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +2
Query: 383 METDQD-NLIEKVRGIYGFKVKNGPNGA-EGYWVINAKEGKGTVA-YNGTDKPDVTFTIS 553
M TD ++ +KV +Y F + G E +V++ K+G+ T Y G KPD TF+ +
Sbjct: 19 MATDAGKDIAKKVGLVYQFNIAPKKIGVDEEIFVVDLKKGEVTKGPYEG--KPDATFSFT 76
Query: 554 DED 562
D D
Sbjct: 77 DSD 79
>11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989
Length = 371
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +2
Query: 365 KILEEAMETDQDNLIEKVRGIYGF--KVKNGPNGAEGYWV-INAKEGK 499
KIL ++T + + IE+V + GF +K P G G+WV ++AK GK
Sbjct: 236 KILRYWIKTPKASTIEEVAQLPGFPDNIKMSPRG--GFWVGLHAKRGK 281
>03_05_0620 - 26196597-26196841,26196929-26197020,26197118-26197296
Length = 171
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +2
Query: 194 GRLCQEVPRAKIALQHNLGLGGAVVITMYRKGFTNVTPNNVSA-IASTPDDFKVYKYMKI 370
G + PR+ +AL+H++ +G V+ YR + N+ A P D +++
Sbjct: 85 GTYARVAPRSGLALKHSIDVGAGVIDADYRGPVGVILFNHSDTDFAVKPGDRIAQMIIEV 144
Query: 371 LEEAMETDQDNLIEKVRGIYGF 436
+ + ++L VRG GF
Sbjct: 145 IVTPEVAEVEDLDATVRGEGGF 166
>06_03_0247 +
18679278-18679319,18679522-18679620,18679897-18680100,
18680334-18680431,18680554-18680641,18680728-18681078,
18682093-18682623
Length = 470
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 541 GNIGLISTVVRDCAFPFFRVYHPVALRTVGTVFHFEPVDAADLLD 407
G I LI +++ P V+H T FHFEP++ DLL+
Sbjct: 270 GKIRLIRDLLKQKMVPDKIVHHIAQAVTDCENFHFEPLENVDLLN 314
>08_02_1277 + 25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 302 TPNNVSAIASTPDDFKVYKYMKILEEAMETDQDNLIEKVRG 424
T N + +A D + Y KILE E ++ L+ +V+G
Sbjct: 1728 TEGNDNLLAMMKDQYANYVVQKILETCNEQQRELLLSRVKG 1768
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 359 YMKILEEAMETDQDNLIEKVRGIYGFKVKNGPNGAE 466
Y K L E++ T + K+ GIY +K+ G E
Sbjct: 1612 YFKYLSESISTGSPTSLAKILGIYQVTIKHVKGGKE 1647
>05_03_0042 -
7675244-7675846,7675946-7676101,7676444-7676511,
7680128-7680383
Length = 360
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -2
Query: 218 AAPLDKDVRRTGTAKSQ*AVTIVSISPLVVKIKR 117
A PL++ V RTGTA S T ++ +P V +++R
Sbjct: 242 AMPLERCVNRTGTATS--PATCLARAPAVARVER 273
>04_04_0720 -
27543998-27544230,27544339-27544432,27544571-27544898,
27545387-27545850
Length = 372
Score = 27.5 bits (58), Expect = 7.9
Identities = 20/94 (21%), Positives = 39/94 (41%)
Frame = +2
Query: 131 PPAEISIQ*SQLTATSLFQFVGRLCQEVPRAKIALQHNLGLGGAVVITMYRKGFTNVTPN 310
PP + ++ + + +F+ L + P +AL GL + + Y TP+
Sbjct: 140 PPTDQEVRAAVASIQEVFENHPGLDSDAPAQALALSPISGLPPSGMFVNYFS--EGSTPS 197
Query: 311 NVSAIASTPDDFKVYKYMKILEEAMETDQDNLIE 412
++ STP D K+ + + +T + IE
Sbjct: 198 DIKIEDSTPSDVKIDQLASLEHSTPDTASEECIE 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,745,701
Number of Sequences: 37544
Number of extensions: 256406
Number of successful extensions: 596
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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