Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O15
         (567 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M75884-1|AAA03558.1|  289|Homo sapiens sterol carrier protein-2 ...   113   3e-25
M75883-1|AAA03557.1|  547|Homo sapiens sterol carrier protein-X/...   113   3e-25
AL445183-3|CAH72590.1|  547|Homo sapiens sterol carrier protein ...   113   3e-25
U11313-1|AAB41286.1|  547|Homo sapiens sterol carrier protein-X/...   111   2e-24
M55421-1|AAA03559.1|  143|Homo sapiens sterol carrier protein-2 ...    75   2e-13
BC005911-1|AAH05911.1|  143|Homo sapiens sterol carrier protein ...    75   2e-13
S52450-1|AAB24921.1|  143|Homo sapiens sterol carrier protein 2 ...    70   7e-12
BC065509-1|AAH65509.1| 1019|Homo sapiens collagen, type VI, alph...    29   8.6  
AF388184-1|AAL18611.1|  783|Homo sapiens cAMP phosphodiesterase ...    29   8.6  

>M75884-1|AAA03558.1|  289|Homo sapiens sterol carrier protein-2
           protein.
          Length = 289

 Score =  113 bits (273), Expect = 3e-25
 Identities = 53/125 (42%), Positives = 81/125 (64%), Gaps = 6/125 (4%)
 Frame = +2

Query: 206 QEVPRAKIALQHNLGLGGAVVITMYRKGF----TNVTPNNVSAI--ASTPDDFKVYKYMK 367
           ++VP AK+ALQHNLG+GGAVV+T+Y+ GF    ++   + + A+  +S  D FK     K
Sbjct: 121 RQVPGAKVALQHNLGIGGAVVVTLYKMGFPEAASSFRTHQIEAVPTSSASDGFKANLVFK 180

Query: 368 ILEEAMETDQDNLIEKVRGIYGFKVKNGPNGAEGYWVINAKEGKGTVAYNGTDKPDVTFT 547
            +E+ +E + +  ++K+ GI+ FKVK+GP G E  WV++ K GKG+V  N   K D T T
Sbjct: 181 EIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSDKKADCTIT 240

Query: 548 ISDED 562
           ++D D
Sbjct: 241 MADSD 245


>M75883-1|AAA03557.1|  547|Homo sapiens sterol carrier
           protein-X/sterol carrier protein-2 protein.
          Length = 547

 Score =  113 bits (273), Expect = 3e-25
 Identities = 53/125 (42%), Positives = 81/125 (64%), Gaps = 6/125 (4%)
 Frame = +2

Query: 206 QEVPRAKIALQHNLGLGGAVVITMYRKGF----TNVTPNNVSAI--ASTPDDFKVYKYMK 367
           ++VP AK+ALQHNLG+GGAVV+T+Y+ GF    ++   + + A+  +S  D FK     K
Sbjct: 379 RQVPGAKVALQHNLGIGGAVVVTLYKMGFPEAASSFRTHQIEAVPTSSASDGFKANLVFK 438

Query: 368 ILEEAMETDQDNLIEKVRGIYGFKVKNGPNGAEGYWVINAKEGKGTVAYNGTDKPDVTFT 547
            +E+ +E + +  ++K+ GI+ FKVK+GP G E  WV++ K GKG+V  N   K D T T
Sbjct: 439 EIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSDKKADCTIT 498

Query: 548 ISDED 562
           ++D D
Sbjct: 499 MADSD 503


>AL445183-3|CAH72590.1|  547|Homo sapiens sterol carrier protein 2
           protein.
          Length = 547

 Score =  113 bits (273), Expect = 3e-25
 Identities = 53/125 (42%), Positives = 81/125 (64%), Gaps = 6/125 (4%)
 Frame = +2

Query: 206 QEVPRAKIALQHNLGLGGAVVITMYRKGF----TNVTPNNVSAI--ASTPDDFKVYKYMK 367
           ++VP AK+ALQHNLG+GGAVV+T+Y+ GF    ++   + + A+  +S  D FK     K
Sbjct: 379 RQVPGAKVALQHNLGIGGAVVVTLYKMGFPEAASSFRTHQIEAVPTSSASDGFKANLVFK 438

Query: 368 ILEEAMETDQDNLIEKVRGIYGFKVKNGPNGAEGYWVINAKEGKGTVAYNGTDKPDVTFT 547
            +E+ +E + +  ++K+ GI+ FKVK+GP G E  WV++ K GKG+V  N   K D T T
Sbjct: 439 EIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSDKKADCTIT 498

Query: 548 ISDED 562
           ++D D
Sbjct: 499 MADSD 503


>U11313-1|AAB41286.1|  547|Homo sapiens sterol carrier
           protein-X/sterol carrier protein-2 protein.
          Length = 547

 Score =  111 bits (266), Expect = 2e-24
 Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 6/125 (4%)
 Frame = +2

Query: 206 QEVPRAKIALQHNLGLGGAVVITMYRKGF----TNVTPNNVSAI--ASTPDDFKVYKYMK 367
           ++VP AK+ALQHNL +GGAVV+T+Y+ GF    ++   + + A+  +S  D FK     K
Sbjct: 379 RQVPGAKVALQHNLDIGGAVVVTLYKMGFPEAASSFRTHQIEAVPTSSASDGFKANLVFK 438

Query: 368 ILEEAMETDQDNLIEKVRGIYGFKVKNGPNGAEGYWVINAKEGKGTVAYNGTDKPDVTFT 547
            +E+ +E + +  ++K+ GI+ FKVK+GP G E  WV++ K GKG+V  N   K D T T
Sbjct: 439 EIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSDKKADCTIT 498

Query: 548 ISDED 562
           ++D D
Sbjct: 499 MADSD 503


>M55421-1|AAA03559.1|  143|Homo sapiens sterol carrier protein-2
           protein.
          Length = 143

 Score = 74.9 bits (176), Expect = 2e-13
 Identities = 32/79 (40%), Positives = 48/79 (60%)
 Frame = +2

Query: 326 ASTPDDFKVYKYMKILEEAMETDQDNLIEKVRGIYGFKVKNGPNGAEGYWVINAKEGKGT 505
           +S  D FK     K +E+ +E + +  ++K+ GI+ FKVK+GP G E  WV++ K GKG+
Sbjct: 21  SSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGS 80

Query: 506 VAYNGTDKPDVTFTISDED 562
           V  N   K D T T++D D
Sbjct: 81  VLPNSDKKADCTITMADSD 99


>BC005911-1|AAH05911.1|  143|Homo sapiens sterol carrier protein 2
           protein.
          Length = 143

 Score = 74.9 bits (176), Expect = 2e-13
 Identities = 32/79 (40%), Positives = 48/79 (60%)
 Frame = +2

Query: 326 ASTPDDFKVYKYMKILEEAMETDQDNLIEKVRGIYGFKVKNGPNGAEGYWVINAKEGKGT 505
           +S  D FK     K +E+ +E + +  ++K+ GI+ FKVK+GP G E  WV++ K GKG+
Sbjct: 21  SSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGS 80

Query: 506 VAYNGTDKPDVTFTISDED 562
           V  N   K D T T++D D
Sbjct: 81  VLPNSDKKADCTITMADSD 99


>S52450-1|AAB24921.1|  143|Homo sapiens sterol carrier protein 2
           protein.
          Length = 143

 Score = 69.7 bits (163), Expect = 7e-12
 Identities = 30/79 (37%), Positives = 47/79 (59%)
 Frame = +2

Query: 326 ASTPDDFKVYKYMKILEEAMETDQDNLIEKVRGIYGFKVKNGPNGAEGYWVINAKEGKGT 505
           +S  D FK     K +E+ +E + +  ++K+ GI+ FKVK+GP G E  WV++ K G+G+
Sbjct: 21  SSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEDTWVVDVKNGQGS 80

Query: 506 VAYNGTDKPDVTFTISDED 562
           V  N   K D T T++  D
Sbjct: 81  VLPNSDKKADCTITMAASD 99


>BC065509-1|AAH65509.1| 1019|Homo sapiens collagen, type VI, alpha 2
           protein.
          Length = 1019

 Score = 29.5 bits (63), Expect = 8.6
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
 Frame = +2

Query: 296 NVTPNNVSAIASTPDDFKVYKYMKILEEAMETDQD--NLIEKV--RGIYG--FKVK---- 445
           N+    +  IASTP +     Y  +L ++ E DQD  N I KV     YG  +KV     
Sbjct: 195 NLKEQGLRDIASTPHELYRNDYATMLPDSTEIDQDTINRIIKVMKHEAYGECYKVSCLEI 254

Query: 446 NGPNGAEGY 472
            GP+G +GY
Sbjct: 255 PGPSGPKGY 263


>AF388184-1|AAL18611.1|  783|Homo sapiens cAMP phosphodiesterase
           PDE8A2 protein.
          Length = 783

 Score = 29.5 bits (63), Expect = 8.6
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +2

Query: 350 VYKYMKILEEAME-TDQDNLIEKVRGIYGFKVKNGPN 457
           V+  ++  E+A+E T +D  I++ +GIY  K KNG N
Sbjct: 217 VFTALENSEDAIEITSEDRFIQEWQGIYYAKKKNGDN 253


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,491,953
Number of Sequences: 237096
Number of extensions: 1323843
Number of successful extensions: 2737
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2733
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)