Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_O13
(572 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 113 2e-26
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 96 4e-21
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 75 1e-14
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 67 2e-12
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 54 2e-08
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 53 3e-08
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 52 6e-08
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 44 2e-05
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 40 2e-04
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 40 3e-04
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 36 0.003
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 33 0.022
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 33 0.039
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 31 0.16
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ... 29 0.48
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 27 2.6
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po... 27 2.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.6
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.9
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 113 bits (272), Expect = 2e-26
Identities = 54/110 (49%), Positives = 74/110 (67%)
Frame = +1
Query: 190 QLKERGNAALASGEYSLAVKLYTEAISHDPKNHVLFSNRSAAHAKAGNYDAALEDAESTV 369
+LK +GNAA + +Y A+ +T+AI D +NH+L+SNRSA +A +Y AL+DA
Sbjct: 4 ELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCT 63
Query: 370 ALNPSWSKGYSRKGSALAYLGRYEDAIAAYEEGLKLEPNNEQLASGLAEV 519
L P W+KG+SRKG+AL LG + A +AYEEGLK + NN QL +GL V
Sbjct: 64 ELKPDWAKGWSRKGAALHGLGDLDAARSAYEEGLKHDANNAQLLNGLKSV 113
Score = 64.5 bits (150), Expect = 1e-11
Identities = 34/117 (29%), Positives = 55/117 (47%)
Frame = +1
Query: 178 DQVAQLKERGNAALASGEYSLAVKLYTEAISHDPKNHVLFSNRSAAHAKAGNYDAALEDA 357
D+ + + +GN SG+++ A+K YTE P + F NR+AA+ K + D
Sbjct: 397 DKAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDC 456
Query: 358 ESTVALNPSWSKGYSRKGSALAYLGRYEDAIAAYEEGLKLEPNNEQLASGLAEVTKQ 528
+ L+P+++K Y RK AL L Y I A E +++ L E+ Q
Sbjct: 457 NKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVDRREPNTGKNLREIESQ 513
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 95.9 bits (228), Expect = 4e-21
Identities = 48/119 (40%), Positives = 74/119 (62%)
Frame = +1
Query: 178 DQVAQLKERGNAALASGEYSLAVKLYTEAISHDPKNHVLFSNRSAAHAKAGNYDAALEDA 357
++ +LK GN A+A+ +Y A+ LYT+AI DP + V +SNR+AA+ + G ++ A+EDA
Sbjct: 81 EEAEKLKLEGNNAIAAKDYQKALDLYTKAIEIDPTSPVYYSNRAAAYNQLGQFENAVEDA 140
Query: 358 ESTVALNPSWSKGYSRKGSALAYLGRYEDAIAAYEEGLKLEPNNEQLASGLAEVTKQAN 534
+ ++L+P ++ + R G A LG A AY++GL +PNNE L GL KQ N
Sbjct: 141 LTCLSLDPHHARAFGRLGRAKLSLGDAAAAADAYKKGLDFDPNNEVLKRGLEAANKQLN 199
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 74.5 bits (175), Expect = 1e-14
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Frame = +1
Query: 181 QVAQLKERGNAALASGEYSLAVKLYTEAISHDPKNHVLFSNRSAAHAKAGNYDAALEDAE 360
+ +LK N L G A+ LYT+AI D N +L+SNRS AH K+ +Y A+ DA
Sbjct: 4 EALELKNEANKFLKEGHIVQAIDLYTKAIELDSTNAILYSNRSLAHLKSEDYGLAINDAS 63
Query: 361 STVALNPSWSKGYSRKGSALAYLGRYEDAIAAYEEGLKLEPNNEQLASGLAE---VTKQA 531
+ +P ++K Y R+ +A + + ++A+ + + L L P++ L E + K+
Sbjct: 64 KAIECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKALALAPSDPAARKKLRECEQLVKRI 123
Query: 532 NIQE 543
QE
Sbjct: 124 RFQE 127
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 66.9 bits (156), Expect = 2e-12
Identities = 33/90 (36%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Frame = +1
Query: 187 AQLKERGNAALASGEYSLAVKLYTEAI--SHDPKNHVLFSNRSAAHAKAGNYDAALEDAE 360
A+LK GN A EY+ A+ YT+AI SHDP + FSNR+A +A G+++ ++D
Sbjct: 152 AELKTLGNKAYGQKEYANAIDYYTQAITCSHDP---IFFSNRAACYAAIGDFEQVIKDTS 208
Query: 361 STVALNPSWSKGYSRKGSALAYLGRYEDAI 450
++L+ S+ K +R+ +A LG+ ++A+
Sbjct: 209 EALSLDSSYVKALNRRSAAYEQLGKLDEAL 238
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 53.6 bits (123), Expect = 2e-08
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Frame = +1
Query: 181 QVAQLKERGNAALASGEYSLAVKLYTEAISHDPKNHV-LFSNRSAAHAKAGNYDAALEDA 357
QV +KE+ L+ ++ A+ T+ I +P + LF R+ + K+G Y A DA
Sbjct: 5 QVKAIKEKTQQYLSKRKFEDALTFITKTIEQEPNPTIDLFELRAQVYEKSGQYSQAELDA 64
Query: 358 ESTVALNPSWSKGYSRKGSALAYLGRYEDAIAAYEEGLKLEPNNEQLASGLAEVTKQAN 534
+ + LN ++GY R G L G + A Y +GL++ + L L +V+++ N
Sbjct: 65 KRMIHLNARNARGYLRLGKLLQLDGFDKKADQLYTQGLRMVHKMDPLRPVLKKVSQRLN 123
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 53.2 bits (122), Expect = 3e-08
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Frame = +1
Query: 181 QVAQ-LKERGNAALASGEYSLAVKLYTEAISH---DPKNHVL-FSNRSAAHAKAGNYDAA 345
+VAQ +E GN AS Y A + YT+A++ D + +SNR+A + NY
Sbjct: 62 EVAQNFREHGNECFASKRYKDAEEFYTKALAQKCGDKDIEIACYSNRAACNLLFENYRQV 121
Query: 346 LEDAESTVALNPSWSKGYSRKGSALAYLGRYEDAIAAYEEGLKLEPNNEQLASGLAEVTK 525
L D + + + +K Y R AL L RY++A + PN+ + + E+ K
Sbjct: 122 LNDCAQVLQRDSTHAKAYYRSAKALVALKRYDEAKECIRLCSLVHPNDPAILALSKELQK 181
Query: 526 QANIQEEKMLQKLR 567
+++ E++ +K R
Sbjct: 182 KSDDFEKRESEKKR 195
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 52.0 bits (119), Expect = 6e-08
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Frame = +1
Query: 196 KERGNAALASGEYSLAVKLYTEAISHDPKNH----VLFSNRSAAHAKAGNYDAALEDAES 363
K +GN G Y A + Y+EA+ DP N L+ NR+ + + AL D+++
Sbjct: 227 KNQGNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVLLRLKRPEEALSDSDN 286
Query: 364 TVALNPSWSKGYSRKGSALAYLGRYEDAIAAYEEGLKLEPNNEQLASGLAEVTKQANIQE 543
+A++ S+ KG + A L ++E+A+ + ++L+ ++ L L + + +
Sbjct: 287 ALAIDSSYLKGLKVRAKAHEALEKWEEAVRDVQSAIELDASDANLRQELRRLQLELKKSK 346
Query: 544 EK 549
K
Sbjct: 347 RK 348
Score = 45.6 bits (103), Expect = 5e-06
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Frame = +1
Query: 196 KERGNAALASGEYSLAVKLYTEAI--SHDPKNHVLFSNRSAAHAKAGNYDAALEDAESTV 369
K GNA +Y+ A+K YTEAI D + +SNR+A + + G ++ AL DA+ +
Sbjct: 27 KAIGNAFYKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGEFELALCDAKQSD 86
Query: 370 ALNPSWSKGYSRKGSA---LAYLGRYEDAIAAYEEGLKL 477
+ P K SR A L+ L E + + GL L
Sbjct: 87 RIKPDVPKTQSRIRQAYEGLSILNEAEVYLKNKQAGLAL 125
Score = 33.9 bits (74), Expect = 0.017
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +1
Query: 337 DAALEDAESTVALNPSWSKGYSRKGSALAYLGRYEDAIAAYEEGLKLEPNNEQLASGLAE 516
D A + A + LNP + +G + Y G AI ++E LKL+P+ + +
Sbjct: 160 DRAQKIAHDVLRLNPKNVEALVLRGKVMYYSGENAKAITHFQEALKLDPDCTTAKTLFKQ 219
Query: 517 VTKQANIQEE 546
V K N + +
Sbjct: 220 VRKLENTKNQ 229
Score = 27.1 bits (57), Expect = 2.0
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 16/115 (13%)
Frame = +1
Query: 184 VAQLKERGNAALASGEYSLAVKLYTEAISHDP---KNHVLF---------SNRSAAHAKA 327
V L RG SGE + A+ + EA+ DP LF N+ +
Sbjct: 177 VEALVLRGKVMYYSGENAKAITHFQEALKLDPDCTTAKTLFKQVRKLENTKNQGNDLFRQ 236
Query: 328 GNYDAALEDAESTVALNP----SWSKGYSRKGSALAYLGRYEDAIAAYEEGLKLE 480
GNY A E + ++P + +K Y + + L L R E+A++ + L ++
Sbjct: 237 GNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVLLRLKRPEEALSDSDNALAID 291
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 43.6 bits (98), Expect = 2e-05
Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Frame = +1
Query: 205 GNAALASGEYSLAVKLYTEAISHDPKNHVLFSNRSAAHAKAGNYDAALEDAESTVALNPS 384
G +A +Y+ A + Y +A+ D +N + + + + Y AL+ + LNP
Sbjct: 591 GRCYVAQQKYNKAYEAYQQAVYRDGRNPTFWCSIGVLYYQINQYQDALDAYSRAIRLNPY 650
Query: 385 WSKGYSRKGSALAYL-GRYEDAIAAYEEGLKLEPNNEQLASGLAEVTKQANIQEEKML 555
S+ + G+ + DA+ AY+ +L+P N + + L ++ + N ++ K++
Sbjct: 651 ISEVWYDLGTLYESCHNQISDALDAYQRAAELDPTNPHIKARL-QLLRGPNNEQHKIV 707
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 40.3 bits (90), Expect = 2e-04
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Frame = +1
Query: 55 IEVSFLACSNTAVTNHKGKKEKLFSKLSDCFIY*LNYN*VMDQVAQLKERGNAALASGEY 234
+E ++ + + V N+K K + + + LN N V V + + GN G++
Sbjct: 374 LETAYESTTARQVNNNKPGKSTVKKREEET----LN-NMVSALVEEQQSTGNELFRKGDF 428
Query: 235 SLAVKLYTEAISHDPKNHV----LFSNRSAAHAKAGNYDAALEDAESTV 369
S A++ +T ++S P H L SNRS + K G+ L+D + V
Sbjct: 429 SQAIEEFTNSLSQLPAKHTKRVPLLSNRSLCYQKVGDLKTCLQDVDELV 477
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 39.5 bits (88), Expect = 3e-04
Identities = 24/98 (24%), Positives = 43/98 (43%)
Frame = +1
Query: 253 YTEAISHDPKNHVLFSNRSAAHAKAGNYDAALEDAESTVALNPSWSKGYSRKGSALAYLG 432
+ AI ++ ++++ S H + +Y + D + +NP K R+G A LG
Sbjct: 30 FLNAIGNENTITPVYADSSLTHLRKKSYTKVVHDCTYALVINPYDKKVIWRRGLAYLRLG 89
Query: 433 RYEDAIAAYEEGLKLEPNNEQLASGLAEVTKQANIQEE 546
A +E L+L+PNN + L + + I E
Sbjct: 90 HPHLANRDWEHSLELDPNNTYIQKSLHRLKEVYYIYRE 127
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 36.3 bits (80), Expect = 0.003
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +1
Query: 229 EYSLAVKLYTEAISHDPKNHVLFSNRSAAHAKAGNYDAALEDAESTVALNPSWSKGYSRK 408
EY + + +A+ +P N +L++ AA A A+ V+L P + + S
Sbjct: 453 EYERSADCFRQALQDEPSNEILWNKLGAALTNAEKNTEAVSSYNRAVSLQPQYVRVRSNM 512
Query: 409 GSALAYLGRYEDA 447
+ LG +EDA
Sbjct: 513 AVSNINLGYFEDA 525
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 33.5 bits (73), Expect = 0.022
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +1
Query: 325 AGNYDAALEDAESTVALNPSWSKGYSRKGSALAYLGRYEDAIAAYEEGLKLEPNNEQLAS 504
A N+ A+ +S + ++P + +S G A A GRY A+ A+ L+P++ +
Sbjct: 663 AKNFHKAIVHFQSALRISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILDPDDWYVKY 722
Query: 505 GLAEVTK 525
+A + K
Sbjct: 723 FIATLEK 729
Score = 30.3 bits (65), Expect = 0.21
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Frame = +1
Query: 205 GNAALASGEYSLAVKLYTEAISHDPKNHVLFSNRSAAHAKAGNYDAALEDAESTVALNP- 381
G L + + A+ + A+ PK+ +S A+A++G Y +AL+ L+P
Sbjct: 657 GVLELNAKNFHKAIVHFQSALRISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILDPD 716
Query: 382 SWSKGYSRKGSALAYLGRYEDAIAAYEEGLKLEPNNEQLASGLAE 516
W Y + +G YE A++ E L + + LAE
Sbjct: 717 DWYVKYF-IATLEKDMGEYEVAVSTLSEILAVRSKELCVQVSLAE 760
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 32.7 bits (71), Expect = 0.039
Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Frame = +1
Query: 226 GEYSLAVKLYTEAISHDPKNHVLFSNRSAAHAKAGNYDAALEDAESTVALNPSWSKGYSR 405
G+ A+ + E++ +P ++ + A + YDAA+E +++NP + ++
Sbjct: 535 GDLLQAMNCFNESLKINPLSYPTWFTYGCAALELQKYDAAMEAFSRCLSINPEDGESWNN 594
Query: 406 KGSALAYLGRY--EDAIAAYEEGLKLEPNNEQLASGLAEVTKQANIQEEKMLQKLR 567
SA+ + E A A ++G+K +N ++ ++ N E +++ LR
Sbjct: 595 LASAMLKAKDHTKEQAWHAMQQGIKYMYDNWRIWENYMLISVDVNKWSE-VIRALR 649
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 30.7 bits (66), Expect = 0.16
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +1
Query: 436 YEDAIAAYEEGLKLEPNNEQLASGLAEVTKQANIQEEK---MLQKLRE 570
Y AI +Y++ +K +P N A G+A + Q N Q K +L K+RE
Sbjct: 650 YIKAIQSYDQAIKFDPKNAHAAQGIAIILAQ-NRQFSKALLILSKVRE 696
Score = 25.8 bits (54), Expect = 4.5
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 331 NYDAALEDAESTVALNPSWS---KGYSRKGSALAYLGRYEDAIAAYEEGLKLEPNNEQLA 501
NY+ ++ AE+ + + S S GY G A +G E A+A+Y++ + + +
Sbjct: 304 NYEGCIKLAENVIQNSFSSSLIADGYYWMGRAYHQMGNNEKAMASYQKAKAADDRHLLSS 363
Query: 502 SGLAEV 519
G+ ++
Sbjct: 364 VGIGQI 369
>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 282
Score = 29.1 bits (62), Expect = 0.48
Identities = 18/93 (19%), Positives = 40/93 (43%)
Frame = +1
Query: 241 AVKLYTEAISHDPKNHVLFSNRSAAHAKAGNYDAALEDAESTVALNPSWSKGYSRKGSAL 420
A+ Y +S DP + V++ + A G ++ + + + + ++
Sbjct: 90 AMSYYNSKLSEDPTHTVIYKRKLALLRSMGQTKECIQGLINYLDTFYNDLEAWAELADIY 149
Query: 421 AYLGRYEDAIAAYEEGLKLEPNNEQLASGLAEV 519
+ +E AI YEE + L+P +L + L ++
Sbjct: 150 VSVEAFESAIFCYEEMVLLQPFEPRLFARLGDL 182
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 211 AALASGEYSLAVKLYTEAISHDPKNHVLFSNRSAAHAKAGNYDAA 345
AA G+++L + Y A+ DP++ FS SA H G Y+ A
Sbjct: 1366 AAWGLGQWNL-ISEYVSAMDRDPQDKEFFSAISAVH--LGQYNKA 1407
>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 503 DANCSLFGSSFRPSS*AAIASSYLP 429
+AN SL S+FRPS A + ++P
Sbjct: 280 NANASLIRSAFRPSDDACVLQYFIP 304
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 469 LKLEPNNEQLASGLAEVTKQANIQEEKM 552
LKL+ N EQ SGL+ K NIQ + M
Sbjct: 1115 LKLKANFEQQHSGLSGAEKDWNIQRKAM 1142
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 25.0 bits (52), Expect = 7.9
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +1
Query: 208 NAALASGEYSLAVKLYTEAISHDPKNHVLFSNRSAAHAKAGNYDAALEDAESTVALNPSW 387
++AL+SG+ A + ++ PK L ++ S A + ++L A S V +PS
Sbjct: 16 SSALSSGKNGAAA----QQAANSPKTVSLMTSSSKAANALQTHKSSLARAASAVPFSPSK 71
Query: 388 SKGYSRKGSA 417
+ S K SA
Sbjct: 72 ATTVSLKESA 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,038,696
Number of Sequences: 5004
Number of extensions: 36283
Number of successful extensions: 143
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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