Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O11
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    29   0.57 
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    25   9.3  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   9.3  

>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 28.7 bits (61), Expect = 0.57
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 352 SRCIHKSIKITLINLTYLSEPCTILFPSINRN 257
           SRC+ +SI    +  T L  PCT   P I RN
Sbjct: 33  SRCVVESIGNPCLLCTQLKIPCTYHLPPIKRN 64


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 439 NVKWWLHYLVLDILTHLMVYAANSY 513
           N  W +  L+LD+LT  + + ++SY
Sbjct: 318 NAAWGMTVLLLDVLTEKLDFHSSSY 342


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 400 YSLFFQLSSQ*KECHFSRCIHKSIKI 323
           ++LFFQ+S     C FS C    I++
Sbjct: 93  HTLFFQISISSFLCRFSNCSEDEIRL 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,112
Number of Sequences: 5004
Number of extensions: 36161
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)