Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O11
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92829-6|CAB07346.1|  214|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AL032618-4|CAB63367.1|  353|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z82272-8|CAB05223.1|  337|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z82260-13|CAB05143.1|  337|Caenorhabditis elegans Hypothetical p...    27   8.4  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z92829-6|CAB07346.1|  214|Caenorhabditis elegans Hypothetical
           protein F10A3.7 protein.
          Length = 214

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 77  CSTHYIMFVLLTSHAYNRLFAI 142
           CS +YIM +L+T H Y R  ++
Sbjct: 102 CSCYYIMLLLITIHFYYRYLSV 123


>AL032618-4|CAB63367.1|  353|Caenorhabditis elegans Hypothetical
           protein Y42A5A.4 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 394 LFFQLSSQ*KECHFSRCIHKSIKITLINLT 305
           + +QL    K CH  +CIH+ +K   I LT
Sbjct: 106 IIYQLLEALKFCHSHKCIHRDVKPENIFLT 135


>Z82272-8|CAB05223.1|  337|Caenorhabditis elegans Hypothetical
           protein F55G11.1 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 149 NNFELILLTLVKLDIVLSLISRCNHKRNL 235
           N+++L+L T+    +V SLI  CN ++ +
Sbjct: 25  NHWDLVLATIAVFGVVASLILICNFRKQM 53


>Z82260-13|CAB05143.1|  337|Caenorhabditis elegans Hypothetical
           protein F55G11.1 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 149 NNFELILLTLVKLDIVLSLISRCNHKRNL 235
           N+++L+L T+    +V SLI  CN ++ +
Sbjct: 25  NHWDLVLATIAVFGVVASLILICNFRKQM 53


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
           protein F40H6.5 protein.
          Length = 1288

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +2

Query: 200 SLISRCNHKRNLFLYY 247
           S+IS+C + RN+++YY
Sbjct: 380 SIISKCGYTRNIYVYY 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,471,580
Number of Sequences: 27780
Number of extensions: 192216
Number of successful extensions: 396
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)