Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_O10
(464 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 199 2e-52
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 199 2e-52
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 139 2e-34
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 139 2e-34
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 139 2e-34
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 85 4e-18
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 44 1e-05
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 42 5e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 6e-05
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 31 0.087
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 26 2.5
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 26 3.3
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 5.7
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 25 7.5
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 25 7.5
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 24 9.9
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 9.9
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 24 9.9
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 199 bits (485), Expect = 2e-52
Identities = 98/145 (67%), Positives = 108/145 (74%)
Frame = +3
Query: 30 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 209
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 210 IQKESTLHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRYYKVDENGKIHRLRRE 389
IQKESTLHLV Y+TP LAVL+YYKV+++G + RLRRE
Sbjct: 61 IQKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRE 120
Query: 390 CTGEQCGAGVFMAVMEDRHYCGKCH 464
C CGA FMA +DR YCG+CH
Sbjct: 121 C--PNCGASTFMANHKDRLYCGRCH 143
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 199 bits (485), Expect = 2e-52
Identities = 98/145 (67%), Positives = 108/145 (74%)
Frame = +3
Query: 30 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 209
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 210 IQKESTLHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRYYKVDENGKIHRLRRE 389
IQKESTLHLV Y+TP LAVL+YYKV+++G + RLRRE
Sbjct: 61 IQKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRE 120
Query: 390 CTGEQCGAGVFMAVMEDRHYCGKCH 464
C CGA FMA +DR YCG+CH
Sbjct: 121 C--PNCGASTFMANHKDRLYCGRCH 143
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 139 bits (337), Expect = 2e-34
Identities = 67/70 (95%), Positives = 69/70 (98%)
Frame = +3
Query: 30 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 209
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 210 IQKESTLHLV 239
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 139 bits (337), Expect = 2e-34
Identities = 67/70 (95%), Positives = 69/70 (98%)
Frame = +3
Query: 30 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 209
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 210 IQKESTLHLV 239
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 139 bits (337), Expect = 2e-34
Identities = 67/70 (95%), Positives = 69/70 (98%)
Frame = +3
Query: 30 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 209
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 210 IQKESTLHLV 239
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 139 bits (337), Expect = 2e-34
Identities = 67/70 (95%), Positives = 69/70 (98%)
Frame = +3
Query: 30 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 209
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 210 IQKESTLHLV 239
IQKESTLHLV
Sbjct: 137 IQKESTLHLV 146
Score = 139 bits (337), Expect = 2e-34
Identities = 67/70 (95%), Positives = 69/70 (98%)
Frame = +3
Query: 30 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 209
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 210 IQKESTLHLV 239
IQKESTLHLV
Sbjct: 213 IQKESTLHLV 222
Score = 139 bits (337), Expect = 2e-34
Identities = 67/70 (95%), Positives = 69/70 (98%)
Frame = +3
Query: 30 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 209
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 210 IQKESTLHLV 239
IQKESTLHLV
Sbjct: 289 IQKESTLHLV 298
Score = 139 bits (337), Expect = 2e-34
Identities = 67/70 (95%), Positives = 69/70 (98%)
Frame = +3
Query: 30 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 209
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 210 IQKESTLHLV 239
IQKESTLHLV
Sbjct: 365 IQKESTLHLV 374
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 85.4 bits (202), Expect = 4e-18
Identities = 36/70 (51%), Positives = 52/70 (74%)
Frame = +3
Query: 30 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 209
M I VKTLTGK I L+++P+D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 210 IQKESTLHLV 239
++ S LHLV
Sbjct: 61 LEGGSVLHLV 70
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 44.0 bits (99), Expect = 1e-05
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +3
Query: 57 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 230
GK LE+EP++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 41.9 bits (94), Expect = 5e-05
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +3
Query: 30 MQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 206
M + K L + + +DT I +K KIQ ++ ++Q+LI++G+ L D +T+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 207 NIQKE 221
NI+++
Sbjct: 61 NIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 41.5 bits (93), Expect = 6e-05
Identities = 20/72 (27%), Positives = 38/72 (52%)
Frame = +3
Query: 24 STMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 203
+ + + +K + + V+ ++ +K I I ++QRLI+AG+ L+D +L
Sbjct: 2 TNISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKT 61
Query: 204 YNIQKESTLHLV 239
Y IQ ++HLV
Sbjct: 62 YKIQDGHSIHLV 73
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 31.1 bits (67), Expect = 0.087
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = -3
Query: 189 DHLPTVYRRRSIFVDQEGCPPYLESWLS 106
DHLP+V RRRSI D G P Y + LS
Sbjct: 611 DHLPSVKRRRSIANDFHGKPDYNKRSLS 638
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = +3
Query: 342 YYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKC 461
Y ++ +N + R C E F V++D H KC
Sbjct: 228 YLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKC 267
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 3.3
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3
Query: 24 STMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 203
S +I V T+ K +V + T+ +K I P D+ +LI AG+ L + L +
Sbjct: 2 SEYRIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEE 61
Query: 204 --YNIQKESTLHLV 239
++ T HLV
Sbjct: 62 ILHDATDLVTFHLV 75
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 5.7
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -3
Query: 192 FDHLPTVYRRRSIFVDQEGCPPYLESWLSHFR*YQRVRP 76
FDH+ + + + + ++D P L+ +LS F Y P
Sbjct: 556 FDHIDSSFVQLATYIDTSMIPSSLKPYLSVFAKYIEAAP 594
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 24.6 bits (51), Expect = 7.5
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 219 PSGYCNQRGFDHLPTVYRRRSIFVDQEGCPPY 124
PS + RG + P+ RRR + G PY
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGFHPY 48
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 24.6 bits (51), Expect = 7.5
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 39 FVKTLTGKTITLEVEPSDTIE--NVKAKIQDKEG 134
F LT T T+E EP+ TI+ ++A++ +K G
Sbjct: 22 FEDALTFITKTIEQEPNPTIDLFELRAQVYEKSG 55
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 24.2 bits (50), Expect = 9.9
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 99 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 218
E ++Q++ + P+Q R+ + GKQ D + D +QK
Sbjct: 252 EQYTERVQNEVTLSPEQLRIQYVGKQ--DPKKHLDAEVQK 289
>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 24.2 bits (50), Expect = 9.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 62 LPRKGFHKNLHR*LPYADP 6
LP+KG+ K LH + + DP
Sbjct: 63 LPKKGYEKALHSFIIHEDP 81
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 24.2 bits (50), Expect = 9.9
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = -3
Query: 255 HRAGGAL-SGASTPSGYCN 202
H +GG + SGA+TP+ Y N
Sbjct: 235 HTSGGGVHSGAATPNAYVN 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,646,706
Number of Sequences: 5004
Number of extensions: 28938
Number of successful extensions: 82
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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