Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O09
         (294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    27   0.76 
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    24   5.3  
SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       23   7.1  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    23   7.1  
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb...    23   9.3  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    23   9.3  

>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 26.6 bits (56), Expect = 0.76
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 154 CLLFYVLIYNYEVSLIRNSIFLYEMCRLYNL 62
           CLL Y   YNY+ +L +++    E  +LY L
Sbjct: 162 CLLNYGATYNYDHTLFKDNGLSCETLKLYTL 192


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 193 SDYDK*AQSVRVHCLLFYV 137
           S  +K  Q  RVHC LF++
Sbjct: 131 SHREKRLQDTRVHCCLFFI 149


>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 157 HCLLFYVLIYNYEVSLIRNSIFLYEMCRLYNLLWLVPITYE 35
           HC  +Y + Y    S + +  F + +C L N+L +  I  E
Sbjct: 76  HCSSYYYIKYRTPDSPVTHLGFQFFICSLINVLPVARIVPE 116


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 15  CYNLAQPSYVIGTSHSKL*SRHISYKNIEF 104
           C+N++ PS VIG     + ++ +S   +EF
Sbjct: 241 CFNISFPSLVIGQERLAVLTKILSQFPLEF 270


>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 236 NEAIKQAQNTHLIPKDA 286
           NE  KQ +NT  IP D+
Sbjct: 250 NEVYKQPENTKSIPNDS 266


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 228 STLTKLSNKPRTHISF 275
           +T+TK SNK R  ISF
Sbjct: 442 NTVTKTSNKKRRKISF 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,108,671
Number of Sequences: 5004
Number of extensions: 18179
Number of successful extensions: 39
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)