Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O09
         (294 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74034-1|CAA98479.1|  313|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    27   1.8  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    27   1.8  
U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila...    27   2.3  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    27   3.1  
L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical pr...    26   5.4  
AC024772-1|AAF60536.2|  242|Caenorhabditis elegans Hypothetical ...    25   7.1  
Z81110-1|CAB03258.2|  322|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z70752-4|CAA94756.2|  363|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AF370362-1|AAK52515.1|  322|Caenorhabditis elegans putative tran...    25   9.4  

>Z74034-1|CAA98479.1|  313|Caenorhabditis elegans Hypothetical
           protein F43A11.1 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -3

Query: 139 VLIYNYEVSLIRNSIFLYEMCRLY-NLLWLVPITY 38
           V+IY + V LI NSI L ++   Y + L+L+ +T+
Sbjct: 190 VIIYTFIVILILNSITLIKILHFYKDSLYLIDLTF 224


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 218  RAEERLPPQRLRQVSTERTSALFVILC 138
            R+   +PPQRL +  TER S L++++C
Sbjct: 4107 RSLSSIPPQRLTKAPTER-SRLYLLVC 4132


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 218  RAEERLPPQRLRQVSTERTSALFVILC 138
            R+   +PPQRL +  TER S L++++C
Sbjct: 4107 RSLSSIPPQRLTKAPTER-SRLYLLVC 4132


>U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila
            roughdeal) homologprotein 1 protein.
          Length = 2049

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 160  VHCLLFYVLIYNYEV 116
            +HCLL+ V  YNYEV
Sbjct: 1500 LHCLLYVVCPYNYEV 1514


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -3

Query: 193  SDYDK*AQSVRV-HCLLFYVLIYNYEVSLIRN 101
            +D++K  ++  + HCLLF  L+ ++ +S I+N
Sbjct: 2334 ADFEKSIETEGITHCLLFPSLVQSFNISKIKN 2365


>L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical
           protein ZK652.6a protein.
          Length = 575

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 105 GTRYFCMKCVDSTICYG*F 49
           G RY C++C D  +C+  F
Sbjct: 24  GNRYKCLRCSDYDLCFSCF 42


>AC024772-1|AAF60536.2|  242|Caenorhabditis elegans Hypothetical
           protein Y40C5A.1 protein.
          Length = 242

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 105 GTRYFCMKCVDSTIC 61
           G+RY C++C D  IC
Sbjct: 175 GSRYHCLQCPDYDIC 189


>Z81110-1|CAB03258.2|  322|Caenorhabditis elegans Hypothetical
           protein T01D3.2 protein.
          Length = 322

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 192 LRWQPLLSARVLSTLTKLSNKPRTHIS 272
           L W  + + RV S+LTK +NK     S
Sbjct: 150 LNWPQMCNVRVKSSLTKRANKDAVRAS 176


>Z70752-4|CAA94756.2|  363|Caenorhabditis elegans Hypothetical
           protein F25B3.4 protein.
          Length = 363

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 145 FYVLIYNYEVSLIRNSIFLYEMC-RLYN 65
           F++L  N+E SLI      YE C R YN
Sbjct: 167 FFMLRGNHECSLINRQYGFYEECQRRYN 194


>AF370362-1|AAK52515.1|  322|Caenorhabditis elegans putative
           transcription factor T01D3.2protein.
          Length = 322

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 192 LRWQPLLSARVLSTLTKLSNKPRTHIS 272
           L W  + + RV S+LTK +NK     S
Sbjct: 150 LNWPQMCNVRVKSSLTKRANKDAVRAS 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,003,986
Number of Sequences: 27780
Number of extensions: 96547
Number of successful extensions: 193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)