Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O09
         (294 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   0.59 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   2.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   4.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   4.2  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               19   9.6  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 0.59
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 148 LFYVLIYNYEVSLIRNSIFLYEMCRLYNL 62
           L  VL Y Y   LI+  + +++ C ++NL
Sbjct: 306 LLSVLGYKYITPLIQKHLKIHDTCGVHNL 334


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 177  KHRAYECIVCY 145
            + R Y+C VCY
Sbjct: 1062 RERLYDCYVCY 1072


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 151 LLFYVLIYNYEVSLIRN-SIFLYEMCRLYNLLWLV 50
           L+F +L Y+  +S IRN    L E  +  N+  LV
Sbjct: 233 LIFIILFYSRLLSSIRNHEKMLREQAKKMNVKSLV 267


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 151 LLFYVLIYNYEVSLIRN-SIFLYEMCRLYNLLWLV 50
           L+F +L Y+  +S IRN    L E  +  N+  LV
Sbjct: 233 LIFIILFYSRLLSSIRNHEKMLREQAKKMNVKSLV 267


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 129 IIMKYHL*GTRYFCMKCVDSTIC 61
           +I+ + L    Y  ++C D T+C
Sbjct: 5   VILLFTLCIVSYMMVRCDDITLC 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,657
Number of Sequences: 438
Number of extensions: 1516
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)