Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O08
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   4.6  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   6.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   6.1  

>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 473 KYEKVLHSFNYNINVYHELKR 411
           KY +  H F+ N+ VYHE  R
Sbjct: 349 KYFEESHKFDLNLQVYHEKLR 369


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 7/30 (23%), Positives = 19/30 (63%)
 Frame = +1

Query: 220 LLIYIVCYLMSMTQFYIHH*I*FPYFWEKF 309
           LL +I+     +++++++H   F ++W K+
Sbjct: 199 LLFFIISTFFCLSRYHVYHKAPFTFYWFKW 228


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 290  PIFGKNSNKL-YHYCLCTW*HIDLIEYCISQL*PSDVQSFVVVLVRGIH 433
            PIF K    L +H  +    HID + YCIS    S++ +F   L+R IH
Sbjct: 1246 PIFAKPLRALPFHIQIG---HIDAVNYCISL--GSELITFSDELIRLIH 1289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,187
Number of Sequences: 5004
Number of extensions: 41251
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)