Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O06
         (265 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    24   3.0  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    24   4.0  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    23   7.0  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    23   9.2  
SPBC16A3.16 |||mitochondrial inner membrane protein involved in ...    23   9.2  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    23   9.2  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    23   9.2  

>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 184 SLTFRKFFTRRNNKWRSLASAISRESQDSRTVSLF 80
           ++T  +  +   N W SL+S I   S   RT+  F
Sbjct: 338 TVTVDRSLSNDGNHWGSLSSTIYNPSSSPRTIVYF 372


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 145 KWRSLASAISRESQDSRTVSLFSMHFTFAL*TN-IRFQF 32
           +W+S A+ +  +  DS+ V L      F   TN ++FQ+
Sbjct: 152 QWQSQATELQGKDADSKLVHLLFFKSLFKFSTNLVKFQW 190


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 18  SMVSLN*NRILVYSAKVKCIENNDTVRESCDSLE 119
           S VSL   ++ V+ A++  +  ++   E C SLE
Sbjct: 803 STVSLPREKMSVFMARLASLTKSELFSEECASLE 836


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 108 DSLEIAEAKDRHLLLRRVKNFLN 176
           D L+  +  D H +L + +NFLN
Sbjct: 21  DQLDPVQRFDTHFMLPQEENFLN 43


>SPBC16A3.16 |||mitochondrial inner membrane protein involved in
           cytochrome c oxidase assembly Pet191
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 85

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 69  KCIENNDTVRESCDSLEIAEAKDRHLLLRRVKNF 170
           +C++N D + E C +L  A  + +  +L   K +
Sbjct: 31  ECLKNKDELPEECKNLIEAYGECKRQMLDMTKRY 64


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 177 HLENFSHDAITNGGLWLPLFQGN 109
           HL+NFS + +    L+  LF  N
Sbjct: 545 HLQNFSEELLKKRKLFSSLFSNN 567


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 153 RRVKNFLNVRLGC 191
           R +K FLN+RL C
Sbjct: 558 RLIKEFLNLRLSC 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,079,098
Number of Sequences: 5004
Number of extensions: 18689
Number of successful extensions: 30
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)