Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O06
         (265 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical pr...    29   0.60 
U53150-1|AAA96123.2|  302|Caenorhabditis elegans Serpentine rece...    26   3.2  
U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AC006615-6|AAK68228.1|  531|Caenorhabditis elegans Hypothetical ...    25   7.4  
U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms prot...    25   9.8  
U50311-5|AAX22295.1|  299|Caenorhabditis elegans Serpentine rece...    25   9.8  
AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.      25   9.8  

>Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical
           protein F17C11.10 protein.
          Length = 1101

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 138 GLWLPLFQGNRRIHAP 91
           GLW+P+FQG+  + AP
Sbjct: 708 GLWIPIFQGSSALRAP 723


>U53150-1|AAA96123.2|  302|Caenorhabditis elegans Serpentine
           receptor, class sx protein32 protein.
          Length = 302

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -2

Query: 147 TNGGLWLPLFQGNRRIHAPCHY---FQCIS 67
           T   + + LF   +  H+PCHY   F C++
Sbjct: 25  TGNSIMIILFIKEKNFHSPCHYMITFSCLA 54


>U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical
           protein C10G11.9 protein.
          Length = 203

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -1

Query: 187 PSLTFRKFFTRRNNKWRSLASAISRESQDSRTVSLFSMH 71
           PS   R+  TRR++  RS+  ++SR S+  R+ S  S++
Sbjct: 82  PSPRRRRPSTRRSSSRRSVVRSVSRGSKSRRSSSRGSVY 120


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -1

Query: 187 PSLTFRKFFTRRNNKWRSLASAISRESQDSRTVSLFSMH 71
           PS   R+  TRR++  RS+  ++SR S+  R+ S  S++
Sbjct: 82  PSPRRRRPSTRRSSSRRSVVRSVSRGSKGRRSSSRGSVY 120


>AC006615-6|AAK68228.1|  531|Caenorhabditis elegans Hypothetical
           protein C36B7.2 protein.
          Length = 531

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 93  PCHYFQCISLLRYKLIYGFNLTI 25
           P H F C+ +L Y +  GF+  +
Sbjct: 248 PDHTFDCVRMLDYNVFRGFHYVV 270


>U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms protein
           1 protein.
          Length = 442

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -1

Query: 187 PSLTFRKFFTRRNNKWRSLASAISRESQDSRTVSLFSMHFTFAL*TNIRFQF 32
           P L+F +FF  R+ KW    + +    Q    +++F+   T A+ ++  F+F
Sbjct: 177 PYLSFEQFFKMRDKKWTGSENELGFIIQS--LLAIFNA-ITLAIISSCHFEF 225


>U50311-5|AAX22295.1|  299|Caenorhabditis elegans Serpentine
           receptor, class sx protein34, isoform c protein.
          Length = 299

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 150 ITNGGLWLPLFQGNRRIHAPCHYFQCISLL 61
           I    + +  F  + ++ +PCHYF  I+ L
Sbjct: 21  IIGNSIMIIAFLKHAKLRSPCHYFIAITCL 50


>AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.
          Length = 442

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -1

Query: 187 PSLTFRKFFTRRNNKWRSLASAISRESQDSRTVSLFSMHFTFAL*TNIRFQF 32
           P L+F +FF  R+ KW    + +    Q    +++F+   T A+ ++  F+F
Sbjct: 177 PYLSFEQFFKMRDKKWTGSENELGFIIQS--LLAIFNA-ITLAIISSCHFEF 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,886,238
Number of Sequences: 27780
Number of extensions: 103863
Number of successful extensions: 227
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)