Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_O05
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical pr... 246 7e-66
U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical pr... 37 0.008
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 30 1.2
U76402-1|AAB39734.1| 777|Caenorhabditis elegans degenerin protein. 28 4.7
U40798-3|AAA81473.2| 777|Caenorhabditis elegans Uncoordinated p... 28 4.7
Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z98877-3|CAB54472.2| 537|Caenorhabditis elegans Hypothetical pr... 27 6.2
U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical pr... 27 8.1
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr... 27 8.1
>Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical
protein F40F8.10 protein.
Length = 189
Score = 246 bits (602), Expect = 7e-66
Identities = 119/158 (75%), Positives = 134/158 (84%)
Frame = +2
Query: 47 RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 226
R+ +V SK +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3 RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62
Query: 227 EEKDAKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSI 406
E+KD KRLFEGNA DE +MKLDYVLGLK+EDFLERRLQTQVF GLAKSI
Sbjct: 63 EDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSI 122
Query: 407 HHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSL 520
HHARILI+Q HIRVR+QVV++PSFIVRLDS KHIDFSL
Sbjct: 123 HHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSL 160
>U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical
protein C48B6.2 protein.
Length = 183
Score = 37.1 bits (82), Expect = 0.008
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Frame = +2
Query: 155 KREVWRVKYTLA-RIRKAARELLTLEEKDAKR--LFEGNAXXXXXXXXXXXDEKQMKLDY 325
KRE + + TLA + R+ A + L E D R E + ++
Sbjct: 40 KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGK 99
Query: 326 VLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 496
V G F RRL + N G+ +S+ A L+ Q H+R+ ++V P+F+V S
Sbjct: 100 VTGAS---FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSS 153
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 391 SCEVNPSCPHLDQTEAYSCPQAGGEHS 471
+CE+N CP D ++CP GG H+
Sbjct: 363 ACELN--CPKCDPKHTFTCPAVGGIHN 387
>U76402-1|AAB39734.1| 777|Caenorhabditis elegans degenerin protein.
Length = 777
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -1
Query: 236 PSPRVSTVHGQPYGCERACT*RATLHAC-CGD 144
P P + H P GC R C L C CGD
Sbjct: 540 PVPYIYNEHYSPEGCHRNCFQLKVLEICGCGD 571
>U40798-3|AAA81473.2| 777|Caenorhabditis elegans Uncoordinated
protein 8 protein.
Length = 777
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -1
Query: 236 PSPRVSTVHGQPYGCERACT*RATLHAC-CGD 144
P P + H P GC R C L C CGD
Sbjct: 540 PVPYIYNEHYSPEGCHRNCFQLKVLEICGCGD 571
>Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical
protein Y69H2.3d protein.
Length = 432
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/49 (30%), Positives = 18/49 (36%)
Frame = +1
Query: 304 ETDETGLCARFED*GLLGAPSSDSGVQCWSCEVNPSCPHLDQTEAYSCP 450
ET TG+ G G V C C+ P C D A +CP
Sbjct: 194 ETPPTGITCANVRCGFKGGCGMVEPVGCVGCKRQPQCLEEDYCRAQNCP 242
>Z98877-3|CAB54472.2| 537|Caenorhabditis elegans Hypothetical
protein Y69H2.3a protein.
Length = 537
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/49 (30%), Positives = 18/49 (36%)
Frame = +1
Query: 304 ETDETGLCARFED*GLLGAPSSDSGVQCWSCEVNPSCPHLDQTEAYSCP 450
ET TG+ G G V C C+ P C D A +CP
Sbjct: 299 ETPPTGITCANVRCGFKGGCGMVEPVGCVGCKRQPQCLEEDYCRAQNCP 347
>U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical
protein R07E4.1b protein.
Length = 986
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/42 (23%), Positives = 27/42 (64%)
Frame = +2
Query: 338 KIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVV 463
++EDFLE+ ++ ++ + ++I H+R LI+ + ++ ++
Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205
>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
protein R07E4.1a protein.
Length = 1122
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/42 (23%), Positives = 27/42 (64%)
Frame = +2
Query: 338 KIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVV 463
++EDFLE+ ++ ++ + ++I H+R LI+ + ++ ++
Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,751,486
Number of Sequences: 27780
Number of extensions: 238905
Number of successful extensions: 785
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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