Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O03
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p...    43   3e-05
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom...    27   1.7  
SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit...    27   1.7  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   3.9  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.2  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   5.2  
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   6.8  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    25   6.8  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    25   9.0  

>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 42.7 bits (96), Expect = 3e-05
 Identities = 22/60 (36%), Positives = 33/60 (55%)
 Frame = +3

Query: 171 LNFLSKSDGSAILAQGETVALVSVNGPLDIKMQKSXSYLEKCTLEVLFSCKSGTPSVADR 350
           +  LS+SDGS+   QG    +  VNGP+D+K++     L K T+EVL    SG     ++
Sbjct: 4   IGILSRSDGSSEWKQGSARVICGVNGPIDVKIRDER--LNKATVEVLVQPVSGVAETLEK 61


>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +3

Query: 150 LKPMKCELNFLSKSDGSAILAQGETVALVSVNGPLDIKMQKSXSYLEKCTLEVLFSCKS- 326
           ++  +C +      +GSA +  G T  L  V+GP +  + KS +  ++  + V  +  S 
Sbjct: 22  MRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSE-PVIKSKARADRTFVNVEINIASF 80

Query: 327 GTPSVADRYKEN 362
            T  V  R+K +
Sbjct: 81  STIDVKKRFKSD 92


>SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit
           7a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 282 YLEKCTLEVLFSCKSGTPSVADRYKENVIKRTCEVVVAGVRPXYPRP 422
           ++E+C+  +LF   +GTPSV+  +K      + + +   V    PRP
Sbjct: 153 FIERCS-NILFQLDAGTPSVSKSFKRASRMSSSDGIDYMVFDKRPRP 198


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 325 LLQLKSTSNVHFSK*LXDFCILI 257
           +L L+S+ N+H    L DFC ++
Sbjct: 296 ILHLRSSQNLHVQDALFDFCFIL 318


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 379 HVLLITFSLYLSATDGVPLLQLKSTSNV 296
           H  + T++ ++S  DG PLL L S S+V
Sbjct: 7   HSNVFTWAFHVSEYDGAPLLLLGSFSSV 34


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 138 EDLNLKPMKCELNFLSKSDGSAILAQGETVA--LVSVNGPLDIKMQKS 275
           +DL L P+K E N+L   D     A  + ++  L+  +   D+K +K+
Sbjct: 187 DDLQLTPIKEERNYLHSQDAPTTNALSKKISDILIPASAMKDLKDRKN 234


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 89  KVKKRLIYHGCHKKLLRRFKFET 157
           K++KRLIY   HKK +   KF +
Sbjct: 192 KIRKRLIYVSQHKKKMPWSKFNS 214


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 291 KCTLEVLFSCKSGTPSVAD 347
           +C L V  +CK+G P VAD
Sbjct: 438 RCELLVPANCKNGEPEVAD 456


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 6/18 (33%), Positives = 15/18 (83%)
 Frame = +2

Query: 107 IYHGCHKKLLRRFKFETY 160
           +Y+GC+K++ R++  E++
Sbjct: 446 LYNGCNKRIARKYNVESH 463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,850
Number of Sequences: 5004
Number of extensions: 36194
Number of successful extensions: 82
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)