Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O03
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0727 - 35766252-35766481,35766592-35766721,35767049-357671...    44   7e-05
07_01_0488 - 3678329-3678577,3678769-3678810,3678891-3678944,367...    28   4.0  
04_03_0791 + 19685720-19685914,19686436-19686459,19686823-196872...    28   4.0  

>03_06_0727 -
           35766252-35766481,35766592-35766721,35767049-35767116,
           35767179-35767217,35767677-35767761,35768097-35768197,
           35768292-35768511
          Length = 290

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 25/80 (31%), Positives = 42/80 (52%)
 Frame = +3

Query: 150 LKPMKCELNFLSKSDGSAILAQGETVALVSVNGPLDIKMQKSXSYLEKCTLEVLFSCKSG 329
           L+P  C  N L ++ GSA  AQG+T+ L +V GP      +     EK ++EV++   +G
Sbjct: 14  LRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPK--PGTRKGENPEKASIEVVWKPMTG 71

Query: 330 TPSVADRYKENVIKRTCEVV 389
                ++  E  +KRT + +
Sbjct: 72  QIGKQEKEYEMTLKRTLQSI 91


>07_01_0488 -
           3678329-3678577,3678769-3678810,3678891-3678944,
           3679149-3679212,3679316-3679410,3679477-3679584,
           3679679-3679752,3680338-3680410,3680539-3680586,
           3680694-3680877,3681262-3681440,3682167-3682259,
           3682738-3682851,3683570-3683644,3683852-3684112,
           3684821-3684934,3685473-3685529,3686668-3686863,
           3686922-3686986,3687112-3687195,3688155-3688223,
           3688545-3688844
          Length = 865

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 150 LKPMKCELNFLSKSDGSAILAQGETVALVSV 242
           L+P+  +   L ++ GSA+  +GET AL  V
Sbjct: 420 LRPINSQCGLLPRAHGSALFTRGETQALAVV 450


>04_03_0791 +
           19685720-19685914,19686436-19686459,19686823-19687205,
           19687282-19687379,19687622-19687800,19687912-19688136,
           19688619-19688678,19688816-19688896,19688983-19689388,
           19690035-19690285
          Length = 633

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 339 VADRYKENVIKRTCEVVVAGVRPXYPRPRELQSLFRNLKTMEGYS 473
           ++D Y  N++ +T  +  +G+ P Y RP   Q +F N K +  Y+
Sbjct: 179 LSDPYPFNLMFQT-SIGPSGLSPGYMRPETAQGIFVNFKDLYYYN 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,193,497
Number of Sequences: 37544
Number of extensions: 216464
Number of successful extensions: 387
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)