Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_O03
(523 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC107696-1|AAI07697.1| 235|Homo sapiens exosome component 5 pro... 75 2e-13
BC007742-1|AAH07742.1| 235|Homo sapiens exosome component 5 pro... 75 2e-13
AF285785-1|AAM75154.1| 268|Homo sapiens chronic myelogenous leu... 75 2e-13
AF281134-1|AAF82135.1| 235|Homo sapiens exosome component Rrp46... 75 2e-13
AL356494-10|CAI15973.1| 172|Homo sapiens chromosome 9 open read... 33 0.46
AL356494-9|CAI15972.1| 156|Homo sapiens chromosome 9 open readi... 33 0.46
AL356494-7|CAI15971.1| 169|Homo sapiens chromosome 9 open readi... 33 0.46
AL356494-6|CAI15969.1| 183|Homo sapiens chromosome 9 open readi... 33 0.46
AL160270-10|CAI13152.1| 172|Homo sapiens chromosome 9 open read... 33 0.46
AL160270-9|CAI13151.1| 156|Homo sapiens chromosome 9 open readi... 33 0.46
AL160270-7|CAI13150.1| 169|Homo sapiens chromosome 9 open readi... 33 0.46
AL160270-6|CAI13149.1| 183|Homo sapiens chromosome 9 open readi... 33 0.46
BC052252-1|AAH52252.1| 272|Homo sapiens exosome component 6 pro... 30 5.7
D84110-1|BAA12228.1| 196|Homo sapiens RBP-MS/type 4 protein. 29 9.9
D84109-1|BAA12227.1| 219|Homo sapiens RBP-MS/type 3 protein. 29 9.9
D84108-1|BAA12226.1| 204|Homo sapiens RBP-MS/type 2 protein. 29 9.9
D84107-1|BAA12225.1| 196|Homo sapiens RBP-MS/type 1 protein. 29 9.9
BC092476-1|AAH92476.1| 219|Homo sapiens RNA binding protein wit... 29 9.9
BC003608-1|AAH03608.1| 219|Homo sapiens RNA binding protein wit... 29 9.9
>BC107696-1|AAI07697.1| 235|Homo sapiens exosome component 5
protein.
Length = 235
Score = 74.9 bits (176), Expect = 2e-13
Identities = 37/84 (44%), Positives = 50/84 (59%)
Frame = +3
Query: 147 NLKPMKCELNFLSKSDGSAILAQGETVALVSVNGPLDIKMQKSXSYLEKCTLEVLFSCKS 326
+L+ CE N LS+ DGSA QG+T L V GP ++K+ K K TLEV+ K
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSK--EIFNKATLEVILRPKI 84
Query: 327 GTPSVADRYKENVIKRTCEVVVAG 398
G P VA++ +E +I+ TCE VV G
Sbjct: 85 GLPGVAEKSRERLIRNTCEAVVLG 108
>BC007742-1|AAH07742.1| 235|Homo sapiens exosome component 5
protein.
Length = 235
Score = 74.9 bits (176), Expect = 2e-13
Identities = 37/84 (44%), Positives = 50/84 (59%)
Frame = +3
Query: 147 NLKPMKCELNFLSKSDGSAILAQGETVALVSVNGPLDIKMQKSXSYLEKCTLEVLFSCKS 326
+L+ CE N LS+ DGSA QG+T L V GP ++K+ K K TLEV+ K
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSK--EIFNKATLEVILRPKI 84
Query: 327 GTPSVADRYKENVIKRTCEVVVAG 398
G P VA++ +E +I+ TCE VV G
Sbjct: 85 GLPGVAEKSRERLIRNTCEAVVLG 108
>AF285785-1|AAM75154.1| 268|Homo sapiens chronic myelogenous
leukemia tumor antigen 28 protein.
Length = 268
Score = 74.9 bits (176), Expect = 2e-13
Identities = 37/84 (44%), Positives = 50/84 (59%)
Frame = +3
Query: 147 NLKPMKCELNFLSKSDGSAILAQGETVALVSVNGPLDIKMQKSXSYLEKCTLEVLFSCKS 326
+L+ CE N LS+ DGSA QG+T L V GP ++K+ K K TLEV+ K
Sbjct: 60 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSK--EIFNKATLEVILRPKI 117
Query: 327 GTPSVADRYKENVIKRTCEVVVAG 398
G P VA++ +E +I+ TCE VV G
Sbjct: 118 GLPGVAEKSRERLIRNTCEAVVLG 141
>AF281134-1|AAF82135.1| 235|Homo sapiens exosome component Rrp46
protein.
Length = 235
Score = 74.9 bits (176), Expect = 2e-13
Identities = 37/84 (44%), Positives = 50/84 (59%)
Frame = +3
Query: 147 NLKPMKCELNFLSKSDGSAILAQGETVALVSVNGPLDIKMQKSXSYLEKCTLEVLFSCKS 326
+L+ CE N LS+ DGSA QG+T L V GP ++K+ K K TLEV+ K
Sbjct: 27 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSK--EIFNKATLEVILRPKI 84
Query: 327 GTPSVADRYKENVIKRTCEVVVAG 398
G P VA++ +E +I+ TCE VV G
Sbjct: 85 GLPGVAEKSRERLIRNTCEAVVLG 108
>AL356494-10|CAI15973.1| 172|Homo sapiens chromosome 9 open reading
frame 25 protein.
Length = 172
Score = 33.5 bits (73), Expect = 0.46
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +3
Query: 183 SKSDGSAILAQGETVALVSVNGPLDIKMQKSXSYLEKCTLEVLFSCKSGTPSVADRYKEN 362
S SDG +GE+VA+ PL +K++K K +L+ + G+P K N
Sbjct: 14 SISDGDCDAREGESVAMNYKPSPLQVKLEKQRELARKGSLK---NGSMGSPVNQQPKKNN 70
Query: 363 VIKRTCEVV 389
V+ RT VV
Sbjct: 71 VMARTRLVV 79
>AL356494-9|CAI15972.1| 156|Homo sapiens chromosome 9 open reading
frame 25 protein.
Length = 156
Score = 33.5 bits (73), Expect = 0.46
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +3
Query: 183 SKSDGSAILAQGETVALVSVNGPLDIKMQKSXSYLEKCTLEVLFSCKSGTPSVADRYKEN 362
S SDG +GE+VA+ PL +K++K K +L+ + G+P K N
Sbjct: 25 SISDGDCDAREGESVAMNYKPSPLQVKLEKQRELARKGSLK---NGSMGSPVNQQPKKNN 81
Query: 363 VIKRTCEVV 389
V+ RT VV
Sbjct: 82 VMARTRLVV 90
>AL356494-7|CAI15971.1| 169|Homo sapiens chromosome 9 open reading
frame 25 protein.
Length = 169
Score = 33.5 bits (73), Expect = 0.46
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +3
Query: 183 SKSDGSAILAQGETVALVSVNGPLDIKMQKSXSYLEKCTLEVLFSCKSGTPSVADRYKEN 362
S SDG +GE+VA+ PL +K++K K +L+ + G+P K N
Sbjct: 25 SISDGDCDAREGESVAMNYKPSPLQVKLEKQRELARKGSLK---NGSMGSPVNQQPKKNN 81
Query: 363 VIKRTCEVV 389
V+ RT VV
Sbjct: 82 VMARTRLVV 90
>AL356494-6|CAI15969.1| 183|Homo sapiens chromosome 9 open reading
frame 25 protein.
Length = 183
Score = 33.5 bits (73), Expect = 0.46
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +3
Query: 183 SKSDGSAILAQGETVALVSVNGPLDIKMQKSXSYLEKCTLEVLFSCKSGTPSVADRYKEN 362
S SDG +GE+VA+ PL +K++K K +L+ + G+P K N
Sbjct: 25 SISDGDCDAREGESVAMNYKPSPLQVKLEKQRELARKGSLK---NGSMGSPVNQQPKKNN 81
Query: 363 VIKRTCEVV 389
V+ RT VV
Sbjct: 82 VMARTRLVV 90
>AL160270-10|CAI13152.1| 172|Homo sapiens chromosome 9 open reading
frame 25 protein.
Length = 172
Score = 33.5 bits (73), Expect = 0.46
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +3
Query: 183 SKSDGSAILAQGETVALVSVNGPLDIKMQKSXSYLEKCTLEVLFSCKSGTPSVADRYKEN 362
S SDG +GE+VA+ PL +K++K K +L+ + G+P K N
Sbjct: 14 SISDGDCDAREGESVAMNYKPSPLQVKLEKQRELARKGSLK---NGSMGSPVNQQPKKNN 70
Query: 363 VIKRTCEVV 389
V+ RT VV
Sbjct: 71 VMARTRLVV 79
>AL160270-9|CAI13151.1| 156|Homo sapiens chromosome 9 open reading
frame 25 protein.
Length = 156
Score = 33.5 bits (73), Expect = 0.46
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +3
Query: 183 SKSDGSAILAQGETVALVSVNGPLDIKMQKSXSYLEKCTLEVLFSCKSGTPSVADRYKEN 362
S SDG +GE+VA+ PL +K++K K +L+ + G+P K N
Sbjct: 25 SISDGDCDAREGESVAMNYKPSPLQVKLEKQRELARKGSLK---NGSMGSPVNQQPKKNN 81
Query: 363 VIKRTCEVV 389
V+ RT VV
Sbjct: 82 VMARTRLVV 90
>AL160270-7|CAI13150.1| 169|Homo sapiens chromosome 9 open reading
frame 25 protein.
Length = 169
Score = 33.5 bits (73), Expect = 0.46
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +3
Query: 183 SKSDGSAILAQGETVALVSVNGPLDIKMQKSXSYLEKCTLEVLFSCKSGTPSVADRYKEN 362
S SDG +GE+VA+ PL +K++K K +L+ + G+P K N
Sbjct: 25 SISDGDCDAREGESVAMNYKPSPLQVKLEKQRELARKGSLK---NGSMGSPVNQQPKKNN 81
Query: 363 VIKRTCEVV 389
V+ RT VV
Sbjct: 82 VMARTRLVV 90
>AL160270-6|CAI13149.1| 183|Homo sapiens chromosome 9 open reading
frame 25 protein.
Length = 183
Score = 33.5 bits (73), Expect = 0.46
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +3
Query: 183 SKSDGSAILAQGETVALVSVNGPLDIKMQKSXSYLEKCTLEVLFSCKSGTPSVADRYKEN 362
S SDG +GE+VA+ PL +K++K K +L+ + G+P K N
Sbjct: 25 SISDGDCDAREGESVAMNYKPSPLQVKLEKQRELARKGSLK---NGSMGSPVNQQPKKNN 81
Query: 363 VIKRTCEVV 389
V+ RT VV
Sbjct: 82 VMARTRLVV 90
>BC052252-1|AAH52252.1| 272|Homo sapiens exosome component 6
protein.
Length = 272
Score = 29.9 bits (64), Expect = 5.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 150 LKPMKCELNFLSKSDGSAILAQGETVALVSVNGP 251
L+P+ LS++ GSA L G T L +V+GP
Sbjct: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGP 69
>D84110-1|BAA12228.1| 196|Homo sapiens RBP-MS/type 4 protein.
Length = 196
Score = 29.1 bits (62), Expect = 9.9
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +3
Query: 321 KSGTPSVADRYKENVIKRTCEVVVAGVRPXYPRPRELQSLFRNLKTMEG 467
K TPS A+ +E V RT + V+G+ P +PREL LFR K EG
Sbjct: 9 KENTPSEANLQEEEV--RT--LFVSGL-PLDIKPRELYLLFRPFKGYEG 52
>D84109-1|BAA12227.1| 219|Homo sapiens RBP-MS/type 3 protein.
Length = 219
Score = 29.1 bits (62), Expect = 9.9
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +3
Query: 321 KSGTPSVADRYKENVIKRTCEVVVAGVRPXYPRPRELQSLFRNLKTMEG 467
K TPS A+ +E V RT + V+G+ P +PREL LFR K EG
Sbjct: 9 KENTPSEANLQEEEV--RT--LFVSGL-PLDIKPRELYLLFRPFKGYEG 52
>D84108-1|BAA12226.1| 204|Homo sapiens RBP-MS/type 2 protein.
Length = 204
Score = 29.1 bits (62), Expect = 9.9
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +3
Query: 321 KSGTPSVADRYKENVIKRTCEVVVAGVRPXYPRPRELQSLFRNLKTMEG 467
K TPS A+ +E V RT + V+G+ P +PREL LFR K EG
Sbjct: 9 KENTPSEANLQEEEV--RT--LFVSGL-PLDIKPRELYLLFRPFKGYEG 52
>D84107-1|BAA12225.1| 196|Homo sapiens RBP-MS/type 1 protein.
Length = 196
Score = 29.1 bits (62), Expect = 9.9
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +3
Query: 321 KSGTPSVADRYKENVIKRTCEVVVAGVRPXYPRPRELQSLFRNLKTMEG 467
K TPS A+ +E V RT + V+G+ P +PREL LFR K EG
Sbjct: 9 KENTPSEANLQEEEV--RT--LFVSGL-PLDIKPRELYLLFRPFKGYEG 52
>BC092476-1|AAH92476.1| 219|Homo sapiens RNA binding protein with
multiple splicing protein.
Length = 219
Score = 29.1 bits (62), Expect = 9.9
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +3
Query: 321 KSGTPSVADRYKENVIKRTCEVVVAGVRPXYPRPRELQSLFRNLKTMEG 467
K TPS A+ +E V RT + V+G+ P +PREL LFR K EG
Sbjct: 9 KENTPSEANLQEEEV--RT--LFVSGL-PLDIKPRELYLLFRPFKGYEG 52
>BC003608-1|AAH03608.1| 219|Homo sapiens RNA binding protein with
multiple splicing protein.
Length = 219
Score = 29.1 bits (62), Expect = 9.9
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +3
Query: 321 KSGTPSVADRYKENVIKRTCEVVVAGVRPXYPRPRELQSLFRNLKTMEG 467
K TPS A+ +E V RT + V+G+ P +PREL LFR K EG
Sbjct: 9 KENTPSEANLQEEEV--RT--LFVSGL-PLDIKPRELYLLFRPFKGYEG 52
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,865,507
Number of Sequences: 237096
Number of extensions: 1311401
Number of successful extensions: 5467
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5463
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -