Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_O02
(583 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 147 9e-37
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 93 3e-20
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 6.1
SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subu... 25 6.1
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.1
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc... 25 6.1
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 25 8.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.1
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 147 bits (357), Expect = 9e-37
Identities = 81/168 (48%), Positives = 109/168 (64%), Gaps = 1/168 (0%)
Frame = +1
Query: 82 YVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNSVVTLIAFQPFKSAVVALENI 261
Y+L+E + G++LF V +++AA +V+ S+ D+ +F VV L +F PFK+A ALEN
Sbjct: 4 YLLYESATGYSLFDVVGADQIAAKTKEVQLSLQDISKFGKVVQLRSFIPFKNAAHALENA 63
Query: 262 NAISEGIIPEDLNLFLESALPKRKKRGKCTLGVLDPKLGAAI-SEALEIQCSHIGAVPEI 438
N ISEG++ + L FLE LPK K+ K +LGV D L +I SE I+C ++
Sbjct: 64 NDISEGVLNDFLKNFLELNLPKASKKKKVSLGVQDKNLATSIKSEIDAIECDTSELTQDL 123
Query: 439 LRGIRHHFHALIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMII 582
LRGIR H L+K L+ AQLGLGHSYSRA+VKFNV+R DNMII
Sbjct: 124 LRGIRFHGDKLLKQLSPGDFERAQLGLGHSYSRAKVKFNVNRNDNMII 171
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 93.1 bits (221), Expect = 3e-20
Identities = 57/170 (33%), Positives = 95/170 (55%), Gaps = 2/170 (1%)
Frame = +1
Query: 79 LYVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNSVVTLIAFQPFKSAVVALEN 258
+++L E +AG+A+F+ + +L + E + + ++++ L +F F+S V AL+N
Sbjct: 1 MFILTETAAGYAIFKAKD--KLLKKRDALIEDLKSPEGASNLLKLQSFAKFESTVDALDN 58
Query: 259 INAISEGIIPEDLNLFLESALPKRKKRGKCTLGVLDPKLGAAISE--ALEIQCSHIGAVP 432
++A+ EG + L+ LE + TL V DPKLG AI++ LE + +V
Sbjct: 59 VSALVEGKVSSKLSSLLEGLSDSKSS----TLVVADPKLGNAINKLPGLEFEIISDSSVQ 114
Query: 433 EILRGIRHHFHALIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMII 582
++ RGIR H +LI GL + LGL HS SR ++KF+ +VD MI+
Sbjct: 115 DLYRGIREHLSSLISGLAPSDLNAMSLGLSHSLSRHKLKFSPDKVDTMIV 164
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 86 YCLSIARASHCSVWPSSRNW 145
Y LS+ R H S WPS+ W
Sbjct: 177 YRLSLLRWIHLSSWPSNWKW 196
>SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subunit
Rpc25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 203
Score = 25.4 bits (53), Expect = 6.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 196 NSVVTLIAFQPFKSAVVALENINAISEGIIPEDLNLFLESALPK 327
N V LI F+PF+ V+ L I + SE I ++ F + +PK
Sbjct: 69 NVVFRLIIFRPFRGEVM-LGKIKSCSEEGIRVTISFFDDIFIPK 111
>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 237
Score = 25.4 bits (53), Expect = 6.1
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +2
Query: 92 LSIARASHCSVWPSSRNWQRSSPKWKN 172
+S A ++ S W++ SP+WK+
Sbjct: 1 MSSAELGKLHIYASPEQWEKWSPRWKS 27
>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
reductase AKR3C2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 6.1
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +1
Query: 97 HSAGFALFRVAEFEEL---AAFLPQVEESVTDLQRFNSVVTLIAFQPFKSAVV 246
HS G + FR+ + EEL + P+V + Q + + L+ F K +V
Sbjct: 138 HSVGVSNFRIPDLEELLKTSTITPRVNQIEFHPQVYKAAKPLVEFCQSKGIIV 190
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 187 VNQSQILPLGGGTLPIPRTRPHGTVRSPR 101
V+QSQ + G + +P T+P + PR
Sbjct: 277 VSQSQTVETSGPSKEVPTTQPDASAAKPR 305
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 8.1
Identities = 22/74 (29%), Positives = 33/74 (44%)
Frame = -3
Query: 383 AAPNLGSSTPSVHFPLFLRLGSALSRNRFKSSGIIPSDIAFMFSKATTADLKG*NAMRVT 204
A P+ SSTPS + + S LS SS IP+ + FS + T G ++ +
Sbjct: 517 AIPSTSSSTPSSSI-ISSPMTSVLS-----SSSSIPTSSSSDFSSSITTISSGISSSSIP 570
Query: 203 TELKRCKSVTDSST 162
+ S+ SST
Sbjct: 571 STFSSVSSILSSST 584
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,803
Number of Sequences: 5004
Number of extensions: 51984
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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