Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_O02
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948... 165 2e-41
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 121 1e-37
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061... 93 1e-19
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987... 93 1e-19
12_02_1165 + 26633371-26633679,26635183-26635276,26635732-266358... 33 0.22
12_01_0828 + 7663958-7664114,7664345-7664479,7664588-7664680,766... 29 2.7
10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519... 29 2.7
04_01_0275 + 3648866-3649951 29 3.6
02_05_1150 + 34481965-34482076,34482174-34482268,34482380-344824... 28 4.7
08_02_0926 - 22680661-22680765,22680935-22681084,22681473-22682294 28 6.2
>03_02_1010 -
13194002-13194339,13194421-13194573,13194661-13194809,
13194932-13195184,13195282-13195469,13195684-13195841,
13196093-13196307,13196410-13196614
Length = 552
Score = 165 bits (402), Expect = 2e-41
Identities = 88/170 (51%), Positives = 109/170 (64%), Gaps = 2/170 (1%)
Frame = +1
Query: 79 LYVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNSVVTLIAFQPFKSAVVALEN 258
LY+LFE ++G+ LF +E+ + V SV DL RF V L AF PF SAV AL
Sbjct: 3 LYLLFESASGYGLFHAYGIDEIGQSVDAVRASVVDLDRFGKAVKLAAFTPFSSAVDALNQ 62
Query: 259 INAISEGIIPEDLNLFLESALPKRK--KRGKCTLGVLDPKLGAAISEALEIQCSHIGAVP 432
NAISEGI+ ++L FLE LPK K K+ K +LGV++PK+G+ ISE I C V
Sbjct: 63 CNAISEGIMTDELRSFLELNLPKPKEGKKAKYSLGVVEPKVGSHISEVTGIPCQSNEFVQ 122
Query: 433 EILRGIRHHFHALIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMII 582
E+LRG+R HF I L AQLGLGHSYSRA+VKFNV+RVDNM+I
Sbjct: 123 ELLRGVRLHFDRFISELKKSDLEKAQLGLGHSYSRAKVKFNVNRVDNMVI 172
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 121 bits (291), Expect(2) = 1e-37
Identities = 67/151 (44%), Positives = 91/151 (60%), Gaps = 2/151 (1%)
Frame = +1
Query: 79 LYVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNSVVTLIAFQPFKSAVVALEN 258
LY+LFE ++G+ALF +E+ + SV +LQRF+ V L F PF SAV AL
Sbjct: 3 LYLLFESASGYALFHAHGVDEIGQGVDAARASVLELQRFSKAVKLAGFSPFSSAVDALNQ 62
Query: 259 INAISEGIIPEDLNLFLESALPKRK--KRGKCTLGVLDPKLGAAISEALEIQCSHIGAVP 432
NAISEGI+ ++L FLE LPK K K+ K ++GV++PK+G+ ISEA I C V
Sbjct: 63 CNAISEGIMTDELRSFLELNLPKVKEGKKAKYSVGVMEPKVGSHISEATGIPCQCNEFVQ 122
Query: 433 EILRGIRHHFHALIKGLTLKACSVAQLGLGH 525
E+LRG+R HF I L + + A + GH
Sbjct: 123 ELLRGVRLHFDHFIDQLKVVDFTFALVSTGH 153
Score = 53.2 bits (122), Expect(2) = 1e-37
Identities = 23/26 (88%), Positives = 26/26 (100%)
Frame = +1
Query: 505 AQLGLGHSYSRARVKFNVHRVDNMII 582
AQLGLGHSYSRA+VKFNV+RVDNM+I
Sbjct: 185 AQLGLGHSYSRAKVKFNVNRVDNMVI 210
>03_02_0999 -
13105030-13105434,13105716-13105850,13105933-13106133,
13106374-13106673,13106764-13106964,13107246-13107410,
13107484-13107663,13108171-13108212,13108327-13108404
Length = 568
Score = 93.1 bits (221), Expect = 1e-19
Identities = 64/168 (38%), Positives = 88/168 (52%)
Frame = +1
Query: 79 LYVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNSVVTLIAFQPFKSAVVALEN 258
+ VLFE AGFALF+V + +L + + + T VV L AF F++ AL
Sbjct: 1 MLVLFETPAGFALFKVLDEGKLDK-VEDLWKEFTTSDSARKVVELKAFNKFENTSDALSA 59
Query: 259 INAISEGIIPEDLNLFLESALPKRKKRGKCTLGVLDPKLGAAISEALEIQCSHIGAVPEI 438
I + + L FL+ + G+ TL V D KLG AI E L+I C H AV E+
Sbjct: 60 ATLIIDSKPTKGLRKFLQ-----KHCEGE-TLAVADSKLGNAIKEKLKIDCLHNSAVMEL 113
Query: 439 LRGIRHHFHALIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMII 582
+RG+R+ LI GL + LGL HS SR ++KF+ +VD MII
Sbjct: 114 MRGLRNQLTELISGLGAQDLGPMSLGLSHSLSRYKLKFSPEKVDTMII 161
>03_02_0998 -
13097675-13098079,13098307-13098441,13098522-13098722,
13099060-13099359,13099449-13099649,13099932-13100096,
13100170-13100349,13100896-13100937,13101040-13101117
Length = 568
Score = 93.1 bits (221), Expect = 1e-19
Identities = 64/168 (38%), Positives = 88/168 (52%)
Frame = +1
Query: 79 LYVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNSVVTLIAFQPFKSAVVALEN 258
+ VLFE AGFALF+V + +L + + + T VV L AF F++ AL
Sbjct: 1 MLVLFETPAGFALFKVLDEGKLDK-VEDLWKEFTTSDSARKVVELKAFNKFENTSDALSA 59
Query: 259 INAISEGIIPEDLNLFLESALPKRKKRGKCTLGVLDPKLGAAISEALEIQCSHIGAVPEI 438
I + + L FL+ + G+ TL V D KLG AI E L+I C H AV E+
Sbjct: 60 ATLIIDSKPTKGLRKFLQ-----KHCEGE-TLAVADSKLGNAIKEKLKIDCLHNSAVMEL 113
Query: 439 LRGIRHHFHALIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMII 582
+RG+R+ LI GL + LGL HS SR ++KF+ +VD MII
Sbjct: 114 MRGLRNQLTELISGLGAQDLGPMSLGLSHSLSRYKLKFSPEKVDTMII 161
>12_02_1165 +
26633371-26633679,26635183-26635276,26635732-26635822,
26636112-26636199,26636300-26636341,26636648-26636809,
26636915-26637094,26637280-26637447,26637977-26638195
Length = 450
Score = 32.7 bits (71), Expect = 0.22
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Frame = +1
Query: 85 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNSVVTLIAFQPFKSAVVALENIN 264
+LFE +GFA+FRV++ L + + S TD + VV I F V + N
Sbjct: 172 MLFETPSGFAMFRVSDV--LFRYPEDIWSSFTDPHTAHQVVRTIGFIEVGDKSVVWD--N 227
Query: 265 AISEGIIPEDLNLFLESALPKRKKRGKCTLGVLDPKLGAAISEALEIQCSHIG-AVPEIL 441
I G ED+ F+ K +L V D +L I + L I C G VPE++
Sbjct: 228 DIGPG---EDIEHFILKFPIK-------SLVVPDAQLKFIIEKNLNISCWFNGRIVPELI 277
Query: 442 RGIRH 456
G+ +
Sbjct: 278 WGLNY 282
>12_01_0828 +
7663958-7664114,7664345-7664479,7664588-7664680,
7667122-7668368
Length = 543
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -1
Query: 160 GGGTLPIPRTRPHGTVRSPRYAQTIRIAYSFYLYFIISFLDDKHTCFVCL 11
GGG L PR GT R + + + +L+FI+ L +H V L
Sbjct: 4 GGGGLWRPRVESRGTFRR----RLLTVTAGCFLFFIVFLLSSRHDAIVLL 49
>10_08_0570 +
18851451-18851723,18851894-18851928,18851929-18851998,
18852089-18852187,18852276-18852365,18852430-18852920,
18853015-18853102,18853204-18853245,18853548-18853574,
18853817-18853996,18854249-18854416,18854501-18854710
Length = 590
Score = 29.1 bits (62), Expect = 2.7
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = +1
Query: 85 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNSVVTLIAFQPFKSAVVALENIN 264
+LFE +GF +FRV++ L + + S TD + + V I F +ENI
Sbjct: 360 MLFETPSGFVMFRVSDV--LFRYPEDIWSSFTDPRTAHQAVRTIGF---------IENIG 408
Query: 265 AISEG-IIPE---DLNLFLESALPKRK 333
G I+PE LN L+ +P+ K
Sbjct: 409 CWFNGRIVPELIWGLNYALDEFVPQEK 435
>04_01_0275 + 3648866-3649951
Length = 361
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 124 VAEFEELAAFLPQVEESVTDLQRFNSVVTLIAFQPFKSAV--VALENINAISEGII 285
V E +E AFLP+ +ESV L +V + +P ++A LE I +S+ ++
Sbjct: 95 VRELDEALAFLPEFQESVLILHIATNVFYGLCIEPDQNAASFKQLEAIKTLSDYMV 150
>02_05_1150 +
34481965-34482076,34482174-34482268,34482380-34482471,
34482878-34482971,34483191-34483354,34483755-34483929,
34484017-34484157,34484357-34484452,34484549-34484690,
34484953-34485080,34485179-34485343
Length = 467
Score = 28.3 bits (60), Expect = 4.7
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +1
Query: 175 VTDLQRFNSVVTLIAFQPFK----SAVVALENINAISEGIIPEDLNLFLESALPKRKKRG 342
V L+ +++++ I F K SAV LE + ISE ++ ED ++F+ A KR
Sbjct: 375 VQGLEIASNILSPIVFLKLKTSTGSAVADLELLEVISEKVLKED-SVFI--AATKRSSLD 431
Query: 343 KCTLGV 360
KC L V
Sbjct: 432 KCRLPV 437
>08_02_0926 - 22680661-22680765,22680935-22681084,22681473-22682294
Length = 358
Score = 27.9 bits (59), Expect = 6.2
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = -1
Query: 193 NAVNQSQILPLGGGTLPIPRTRPHGTVRSPRYAQTIRIAYSFYLYF-IISFLDDKH---- 29
++V + P+ TL +PR H VR R R+ S +LYF +IS ++ KH
Sbjct: 73 SSVLKRSAAPVRTVTLRVPRRWFHRAVRWLRLLPRKRVQ-SLHLYFEMISIIEGKHNLDP 131
Query: 28 TCFVCLPL 5
+ F CL L
Sbjct: 132 SIFSCLEL 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,542,717
Number of Sequences: 37544
Number of extensions: 344868
Number of successful extensions: 811
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -