Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O02
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical pr...   159   1e-39
AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical ...    89   2e-18
Z83105-12|CAB05490.2|  142|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z50795-6|CAD59152.2|  707|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z50795-5|CAA90665.2|  705|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z78198-8|CAB01574.2|  333|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z70307-11|CAA94337.1|  488|Caenorhabditis elegans Hypothetical p...    27   7.4  
U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical
           protein K07C5.4 protein.
          Length = 486

 Score =  159 bits (386), Expect = 1e-39
 Identities = 79/168 (47%), Positives = 113/168 (67%), Gaps = 1/168 (0%)
 Frame = +1

Query: 82  YVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNSVVTLIAFQPFKSAVVALENI 261
           +VL+EH+AG+AL ++ EF++    L +V+ +  D  +F+ +V L +F PFK+   ALEN 
Sbjct: 7   FVLYEHAAGYALMKIKEFDDAGLILQEVDAAHADGYKFSQIVELASFDPFKNTEAALENC 66

Query: 262 NAISEGIIPEDLNLFLESALPKRKKRGKCTLGVLDPKLGAAISEAL-EIQCSHIGAVPEI 438
           N+ISEG+   DL  FL+ +LPK+KK     LG+ D KL  +++EA  +++    G + EI
Sbjct: 67  NSISEGLAHPDLTNFLQKSLPKKKKH--VVLGINDSKLAGSLTEAFPDLKLVFGGVITEI 124

Query: 439 LRGIRHHFHALIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMII 582
           LRG R HF  L K L   + S AQL LGHSYSR++VKF+VHRVDNM+I
Sbjct: 125 LRGTRVHFERLAKNLPHHSLSKAQLSLGHSYSRSKVKFDVHRVDNMVI 172


>AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical
           protein W01B11.3 protein.
          Length = 487

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 51/168 (30%), Positives = 95/168 (56%)
 Frame = +1

Query: 79  LYVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNSVVTLIAFQPFKSAVVALEN 258
           + VLFE +AG+A+F+++  ++L   +  + E  +  ++    + L++F+ FK+   A+E 
Sbjct: 1   MLVLFEVAAGYAVFKLSNEKKLKN-VDNIWEEFSTAEKAQENLQLVSFKKFKTTAGAVEA 59

Query: 259 INAISEGIIPEDLNLFLESALPKRKKRGKCTLGVLDPKLGAAISEALEIQCSHIGAVPEI 438
            + I+EG + + L   L+S++ + +K     L V D KLG  I E L + C H  ++ E+
Sbjct: 60  TSEITEGKLSKTLKKLLKSSVDETEK-----LAVGDAKLGNLIKEKLSLNCVHDSSINEL 114

Query: 439 LRGIRHHFHALIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMII 582
           +RG+R H   L+     +  +   L + HS +R +VKFN  ++D MI+
Sbjct: 115 MRGVRAHIEDLL-AEHKEEMNAMNLAVAHSLARYKVKFNPEKIDTMIV 161


>Z83105-12|CAB05490.2|  142|Caenorhabditis elegans Hypothetical
           protein F14H3.12 protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 370 WDPALQVCTFPSSYV*VVHFQEIDSN 293
           WD  ++VCT P  Y+  VHFQ I  +
Sbjct: 102 WD--IEVCTLPRLYLNGVHFQRISGS 125


>Z50795-6|CAD59152.2|  707|Caenorhabditis elegans Hypothetical
           protein R166.5b protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 178 SQILPLGGGTLPIPRT 131
           +++LPLGGGT  +PRT
Sbjct: 172 AELLPLGGGTRRVPRT 187


>Z50795-5|CAA90665.2|  705|Caenorhabditis elegans Hypothetical
           protein R166.5a protein.
          Length = 705

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 178 SQILPLGGGTLPIPRT 131
           +++LPLGGGT  +PRT
Sbjct: 170 AELLPLGGGTRRVPRT 185


>Z78198-8|CAB01574.2|  333|Caenorhabditis elegans Hypothetical
           protein F55C5.9 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = -1

Query: 76  YSFYLYF--IISFLDDKHTCFVCLPLV 2
           Y +YL +  II+ L + H+CF+ LP+V
Sbjct: 47  YKYYLIWHTIINVLTEFHSCFLMLPVV 73


>Z70307-11|CAA94337.1|  488|Caenorhabditis elegans Hypothetical
           protein C39E9.10 protein.
          Length = 488

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 371 LGSS-TPSVHFPLFLRLGSALSRNRFKSSGIIPSDIAFMFS 252
           LGSS  P+ HF LFL L S +       S + PS I+ MF+
Sbjct: 89  LGSSFVPANHFWLFLVLRSFVGIGEASYSNVAPSLISDMFN 129


>U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical
           protein C34D10.2 protein.
          Length = 675

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 136 EELAAFLPQVEESVTDLQRFNSVVTLI 216
           +EL+  LP+++ES T L  FN V++ +
Sbjct: 460 DELSLDLPRIDESGTQLNLFNEVLSSV 486


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,031,907
Number of Sequences: 27780
Number of extensions: 298625
Number of successful extensions: 677
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)