Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O02
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.2  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   5.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 323 LNVRRGESAHLECWIPN*ELP 385
           L +  GE A+L+C +P  +LP
Sbjct: 593 LPMNAGEFANLQCIVPTGDLP 613



 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 142  IPRTRPHGTVRSPRYAQTIRIAY 74
            +P   PH T  +   +QTIRI++
Sbjct: 1080 VPEQPPHDTTCTTLTSQTIRISW 1102


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 342 KVHTWSAGSQIRSCHQRSTRD 404
           + HT     +   CH+R TRD
Sbjct: 2   RTHTGEKPFECPECHKRFTRD 22


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 319 LPKRKKRGKCTLGVLD 366
           LP+R + G CT  V+D
Sbjct: 308 LPERGELGHCTASVMD 323


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 483 DIKSMQCRTTGP 518
           D+ ++ CRT+GP
Sbjct: 708 DLDNVMCRTSGP 719


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,869
Number of Sequences: 438
Number of extensions: 3634
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)