Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O01
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     25   5.2  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    25   5.2  

>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 91  RFILRRQSMRADYSVVQTTLWCRLLCGAGYSVVQTTLWCRLLCGADY 231
           R I  R+ + A    V T  +C  L G  Y+V+ +    R L   DY
Sbjct: 336 RTIAEREKLNAHALEVGTWAFCDFLFGRTYNVISSMSKARKLGYTDY 382


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 398 LLCGADYSVVQTTLWCRLLCGADYSVVQTCVC 493
           L+ GAD+SVVQ  L  R +       VQ CVC
Sbjct: 666 LVNGADFSVVQAFLRIRRMLAT--MNVQLCVC 695


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,317
Number of Sequences: 5004
Number of extensions: 56145
Number of successful extensions: 136
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)