Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O01
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230...    31   0.43 
03_05_0883 + 28483429-28484385,28485090-28485398                       31   0.57 
02_05_1341 - 35801987-35802472                                         29   2.3  

>03_02_0752 -
           10922456-10922644,10922719-10922796,10922888-10923016,
           10923105-10923152,10923243-10923333,10923517-10923648,
           10923869-10924086,10925121-10925271,10925360-10926009,
           10926715-10926786,10926938-10926985,10927105-10927242,
           10927750-10927756,10928064-10928212
          Length = 699

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 317 SVVHPTLWCRLPCGADYSVVQTTLWCRLLCGADYSVVQTTLWCRLLCGADYS 472
           S  HPT+  R+  G  +        C+ +CG D + V+    C   CG   S
Sbjct: 431 SAGHPTVRKRIGDGKQWYTQYNPCGCQQMCGKDCACVENGTCCEKYCGCSKS 482



 Score = 27.5 bits (58), Expect = 7.0
 Identities = 18/76 (23%), Positives = 26/76 (34%)
 Frame = +2

Query: 266 SVVHATLWCRLLCGADYSVVHPTLWCRLPCGADYSVVQTTLWCRLLCGADYSVVQTTLWC 445
           S  H T+  R+  G  +   +    C+  CG D + V+    C   CG   S       C
Sbjct: 431 SAGHPTVRKRIGDGKQWYTQYNPCGCQQMCGKDCACVENGTCCEKYCGCSKSCKNRFRGC 490

Query: 446 RLLCGADYSVVQTCVC 493
              C       + C C
Sbjct: 491 H--CAKSQCRSRQCPC 504


>03_05_0883 + 28483429-28484385,28485090-28485398
          Length = 421

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 524 DYDLCSICDDDRHMSAPQSSLHHRVVCTTE*SAPQSS 414
           D  LC  CD   H + P +  HHRV   +  S+P SS
Sbjct: 36  DAFLCQACDASVHSANPLARRHHRVRLPSASSSPASS 72


>02_05_1341 - 35801987-35802472
          Length = 161

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 422 VVQTTLWCRLLCGADYSVVQTCVCRR 499
           V+  +L C L+C A  ++V  C CRR
Sbjct: 3   VILASLLCALICVAGLALVARCACRR 28


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,066,034
Number of Sequences: 37544
Number of extensions: 441640
Number of successful extensions: 1009
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)