Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_O01
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.           32   0.22 
U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein rec...    32   0.22 
AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor...    32   0.22 
AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor medi...    32   0.22 
AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical ...    27   6.2  

>U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.
          Length = 925

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +1

Query: 37  VPSNE--KSIKECCNGDCEMRFILRRQSMRADYSVVQTTLWCRLLCGAGYSVVQTTLWC 207
           +P N     IKEC  GD E +        R D++ + T    R +C  GY +    L C
Sbjct: 279 IPMNATCNGIKECPLGDDESKHCSECARKRCDHTCMNTPHGARCICQEGYKLADDGLTC 337


>U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein
           receptor precursor protein.
          Length = 925

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +1

Query: 37  VPSNE--KSIKECCNGDCEMRFILRRQSMRADYSVVQTTLWCRLLCGAGYSVVQTTLWC 207
           +P N     IKEC  GD E +        R D++ + T    R +C  GY +    L C
Sbjct: 279 IPMNATCNGIKECPLGDDESKHCSECARKRCDHTCMNTPHGARCICQEGYKLADDGLTC 337


>AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor
           RME-2 protein.
          Length = 925

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +1

Query: 37  VPSNE--KSIKECCNGDCEMRFILRRQSMRADYSVVQTTLWCRLLCGAGYSVVQTTLWC 207
           +P N     IKEC  GD E +        R D++ + T    R +C  GY +    L C
Sbjct: 279 IPMNATCNGIKECPLGDDESKHCSECARKRCDHTCMNTPHGARCICQEGYKLADDGLTC 337


>AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor
           mediated endocytosis protein2 protein.
          Length = 925

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +1

Query: 37  VPSNE--KSIKECCNGDCEMRFILRRQSMRADYSVVQTTLWCRLLCGAGYSVVQTTLWC 207
           +P N     IKEC  GD E +        R D++ + T    R +C  GY +    L C
Sbjct: 279 IPMNATCNGIKECPLGDDESKHCSECARKRCDHTCMNTPHGARCICQEGYKLADDGLTC 337


>AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical
            protein C26G2.1 protein.
          Length = 1270

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 413  DYSVVQTTLWCRLLCGADYSVVQTCVCR 496
            DYS  ++TLW + +   DY+    C+ R
Sbjct: 929  DYSTYESTLWIKNIVPDDYTKKVKCIAR 956


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,094,526
Number of Sequences: 27780
Number of extensions: 372565
Number of successful extensions: 918
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)