Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N24
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    29   0.54 
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    29   0.72 
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    27   2.2  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    26   3.8  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   6.7  
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    25   8.8  

>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 237 DPYYPYDQPESKRNFNEPINARQEIFRGDRYDISMRPRFS 356
           D Y  YD+ E +R+ NE  + R E+ R D      R R+S
Sbjct: 220 DSYSSYDELERRRSSNESYSRRSELPRRDYNRHDERERYS 259


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +1

Query: 85  NTNLARTLKPLKNVLQLQRSMG*H*KSINRTLKNKAMVTIRSFLKLETIQKTPITLTISR 264
           + +L    K   N L +Q+S      S N  L ++A +T+  FL+L  ++   I + +  
Sbjct: 79  DASLVLQTKIRANPLSVQKSNVPSFSSRNTMLASRAPLTVPMFLRLSDLKLNGIVVLVFS 138

Query: 265 SQRGI 279
            Q+GI
Sbjct: 139 KQKGI 143


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = +3

Query: 351 FSLLHQWTWFLGTLGGIFALYFYLEDYKFGRPVTVKQYPRDGPHYLFCPK---*IFIMQI 521
           +SLLH+  W L +   I  ++  L +Y  G    V     + PH LF       IF+ + 
Sbjct: 89  YSLLHERLWSLHSFEDIHEIFISLGNYIEG----VYDSEEEAPHMLFSSSSLLSIFLRKC 144

Query: 522 HVEFLLY*FK*NKRFKHYILLFYIP 596
            VE+  + F+   +F    L +  P
Sbjct: 145 VVEYEQFSFEQGVQFFKSFLQYRAP 169


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 114 GF*GTGQVCIGNSNGFVQNYTITP 43
           GF    Q  +GNSN  V+NY + P
Sbjct: 403 GFEDQQQQLLGNSNEVVENYDVNP 426


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 237 LLNRLQFQEASDSHHSLVLQGTVDTLLVSTHTSLQLQHVLQ 115
           L N L  +E        +++   D L  STH  L+LQH  Q
Sbjct: 139 LQNLLSDKEKEVEKKITIIKDLKDALASSTHQVLELQHTQQ 179


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 240 PYYPYDQPESKRNFNEPINAR 302
           PY+PY +    R + + I AR
Sbjct: 90  PYFPYSKQSKMRKYRDAITAR 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,174
Number of Sequences: 5004
Number of extensions: 53735
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)