Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N24
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0044 - 25150322-25151260                                         29   2.3  
03_01_0378 + 2943605-2943690,2943774-2943920,2944607-2944675,294...    29   3.0  
03_01_0379 + 2946605-2946684,2946798-2946944,2947420-2947488,294...    29   3.9  
05_04_0229 + 19235663-19236166                                         27   9.1  

>05_06_0044 - 25150322-25151260
          Length = 312

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
 Frame = +3

Query: 240 PYYPYDQPESKRNFNEPINARQEIFRGDRY----DISMRPRFSLLHQWTWFLGTLGG--I 401
           P++P+   E   + +   + R     G       D+   P F++L       G  GG  +
Sbjct: 93  PFFPHLTEEGDFHVSPDHDVRVPFMAGSHQHAFMDVGCHPGFNVLRMMYRTGGAAGGDKM 152

Query: 402 FALYFYLEDYKFGRP 446
           FA+Y YL D + G P
Sbjct: 153 FAMYIYLPDDRDGLP 167


>03_01_0378 +
           2943605-2943690,2943774-2943920,2944607-2944675,
           2944758-2944923,2945000-2945228,2945335-2945888
          Length = 416

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 54  CNSVRNHWNYQYKPGPYPKTPEERAAAAKKYGLT 155
           CN    +W + + P P  K  ++ +AA K++ LT
Sbjct: 216 CNDTDVYWFFTWSPSPDDKDVDKSSAATKQFVLT 249


>03_01_0379 +
           2946605-2946684,2946798-2946944,2947420-2947488,
           2947608-2947773,2947889-2948117,2948206-2948645,
           2949155-2949702,2949739-2949760
          Length = 566

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 36  KTAALLCNSVRNHWNYQYKPGPYPKTPEERAAAAKKY 146
           ++  L C+    +WNY + P P     EE  A  + Y
Sbjct: 208 RSGVLPCSDTSVYWNYTWYPSPDDGDAEESVAKMRSY 244


>05_04_0229 + 19235663-19236166
          Length = 167

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 75  WNYQYKPGPYPKTPEERAAAAKKYGLTL 158
           W+    P P P TP+ R A +  Y  TL
Sbjct: 139 WDQPIAPTPKPNTPKSRFALSHSYNQTL 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,621,854
Number of Sequences: 37544
Number of extensions: 309151
Number of successful extensions: 644
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)