Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_N24
(620 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC019276-1|AAH19276.1| 186|Homo sapiens NADH dehydrogenase (ubi... 84 4e-16
BC000466-1|AAH00466.1| 186|Homo sapiens NADH dehydrogenase (ubi... 84 4e-16
AL133352-3|CAH73563.1| 186|Homo sapiens NADH dehydrogenase (ubi... 84 4e-16
AF115968-1|AAP97239.1| 186|Homo sapiens NADH:ubiquinone oxidore... 84 4e-16
AF044958-1|AAD05422.1| 186|Homo sapiens NADH:ubiquinone oxidore... 84 4e-16
AL133352-2|CAH73562.1| 155|Homo sapiens NADH dehydrogenase (ubi... 83 8e-16
CR533490-1|CAG38521.1| 186|Homo sapiens NDUFB8 protein. 81 2e-15
AL133352-4|CAH73564.1| 172|Homo sapiens NADH dehydrogenase (ubi... 79 1e-14
Y18944-1|CAB46274.1| 43|Homo sapiens NADH dehydrogenase (ubiqu... 44 3e-04
>BC019276-1|AAH19276.1| 186|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 beta subcomplex, 8, 19kDa protein.
Length = 186
Score = 83.8 bits (198), Expect = 4e-16
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Frame = +3
Query: 69 NHWNYQYKPGPYPKTPEERAAAAKKYGLTLXXXXXX-XXXXXXXDYPKLPEIGDDSKDPY 245
+H PGPYP+TPEERAAAAKKY + + DYPKLP+ +DP+
Sbjct: 30 SHMTKDMFPGPYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQHERDPW 89
Query: 246 YPYDQPESKRNFNEPINARQEIFRGDRYDISMRPRFSLLHQWTWFLGTLGGIFALYFYLE 425
Y +DQP + N+ EP++ +++ +R D S P S G L + + + +
Sbjct: 90 YSWDQPGLRLNWGEPMHWHLDMYNRNRVDTSPTP-VSWHVMCMQLFGFLAFMIFMCWVGD 148
Query: 426 DYKFGRPVTVKQYP 467
Y +PV KQYP
Sbjct: 149 VYPVYQPVGPKQYP 162
>BC000466-1|AAH00466.1| 186|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 beta subcomplex, 8, 19kDa protein.
Length = 186
Score = 83.8 bits (198), Expect = 4e-16
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Frame = +3
Query: 69 NHWNYQYKPGPYPKTPEERAAAAKKYGLTLXXXXXX-XXXXXXXDYPKLPEIGDDSKDPY 245
+H PGPYP+TPEERAAAAKKY + + DYPKLP+ +DP+
Sbjct: 30 SHMTKDMFPGPYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQHERDPW 89
Query: 246 YPYDQPESKRNFNEPINARQEIFRGDRYDISMRPRFSLLHQWTWFLGTLGGIFALYFYLE 425
Y +DQP + N+ EP++ +++ +R D S P S G L + + + +
Sbjct: 90 YSWDQPGLRLNWGEPMHWHLDMYNRNRVDTSPTP-VSWHVMCMQLFGFLAFMIFMCWVGD 148
Query: 426 DYKFGRPVTVKQYP 467
Y +PV KQYP
Sbjct: 149 VYPVYQPVGPKQYP 162
>AL133352-3|CAH73563.1| 186|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 beta subcomplex, 8, 19kDa protein.
Length = 186
Score = 83.8 bits (198), Expect = 4e-16
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Frame = +3
Query: 69 NHWNYQYKPGPYPKTPEERAAAAKKYGLTLXXXXXX-XXXXXXXDYPKLPEIGDDSKDPY 245
+H PGPYP+TPEERAAAAKKY + + DYPKLP+ +DP+
Sbjct: 30 SHMTKDMFPGPYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQHERDPW 89
Query: 246 YPYDQPESKRNFNEPINARQEIFRGDRYDISMRPRFSLLHQWTWFLGTLGGIFALYFYLE 425
Y +DQP + N+ EP++ +++ +R D S P S G L + + + +
Sbjct: 90 YSWDQPGLRLNWGEPMHWHLDMYNRNRVDTSPTP-VSWHVMCMQLFGFLAFMIFMCWVGD 148
Query: 426 DYKFGRPVTVKQYP 467
Y +PV KQYP
Sbjct: 149 VYPVYQPVGPKQYP 162
>AF115968-1|AAP97239.1| 186|Homo sapiens NADH:ubiquinone
oxidoreductase ASHI subunit protein.
Length = 186
Score = 83.8 bits (198), Expect = 4e-16
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Frame = +3
Query: 69 NHWNYQYKPGPYPKTPEERAAAAKKYGLTLXXXXXX-XXXXXXXDYPKLPEIGDDSKDPY 245
+H PGPYP+TPEERAAAAKKY + + DYPKLP+ +DP+
Sbjct: 30 SHMTKDMFPGPYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQHERDPW 89
Query: 246 YPYDQPESKRNFNEPINARQEIFRGDRYDISMRPRFSLLHQWTWFLGTLGGIFALYFYLE 425
Y +DQP + N+ EP++ +++ +R D S P S G L + + + +
Sbjct: 90 YSWDQPGLRLNWGEPMHWHLDMYNRNRVDTSPTP-VSWHVMCMQLFGFLAFMIFMCWVGD 148
Query: 426 DYKFGRPVTVKQYP 467
Y +PV KQYP
Sbjct: 149 VYPVYQPVGPKQYP 162
>AF044958-1|AAD05422.1| 186|Homo sapiens NADH:ubiquinone
oxidoreductase ASHI subunit protein.
Length = 186
Score = 83.8 bits (198), Expect = 4e-16
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Frame = +3
Query: 69 NHWNYQYKPGPYPKTPEERAAAAKKYGLTLXXXXXX-XXXXXXXDYPKLPEIGDDSKDPY 245
+H PGPYP+TPEERAAAAKKY + + DYPKLP+ +DP+
Sbjct: 30 SHMTKDMFPGPYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQHERDPW 89
Query: 246 YPYDQPESKRNFNEPINARQEIFRGDRYDISMRPRFSLLHQWTWFLGTLGGIFALYFYLE 425
Y +DQP + N+ EP++ +++ +R D S P S G L + + + +
Sbjct: 90 YSWDQPGLRLNWGEPMHWHLDMYNRNRVDTSPTP-VSWHVMCMQLFGFLAFMIFMCWVGD 148
Query: 426 DYKFGRPVTVKQYP 467
Y +PV KQYP
Sbjct: 149 VYPVYQPVGPKQYP 162
>AL133352-2|CAH73562.1| 155|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 beta subcomplex, 8, 19kDa protein.
Length = 155
Score = 83.0 bits (196), Expect = 8e-16
Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Frame = +3
Query: 93 PGPYPKTPEERAAAAKKYGLTLXXXXXX-XXXXXXXDYPKLPEIGDDSKDPYYPYDQPES 269
PGPYP+TPEERAAAAKKY + + DYPKLP+ +DP+Y +DQP
Sbjct: 7 PGPYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQHERDPWYSWDQPGL 66
Query: 270 KRNFNEPINARQEIFRGDRYDISMRPRFSLLHQWTWFLGTLGGIFALYFYLEDYKFGRPV 449
+ N+ EP++ +++ +R D S P S G L + + + + Y +PV
Sbjct: 67 RLNWGEPMHWHLDMYNRNRVDTSPTP-VSWHVMCMQLFGFLAFMIFMCWVGDVYPVYQPV 125
Query: 450 TVKQYP 467
KQYP
Sbjct: 126 GPKQYP 131
>CR533490-1|CAG38521.1| 186|Homo sapiens NDUFB8 protein.
Length = 186
Score = 81.4 bits (192), Expect = 2e-15
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Frame = +3
Query: 69 NHWNYQYKPGPYPKTPEERAAAAKKYGLTLXXXXXX-XXXXXXXDYPKLPEIGDDSKDPY 245
+H PGPYP+ PEERAAAAKKY + + DYPKLP+ +DP+
Sbjct: 30 SHMTKDMFPGPYPRIPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQHERDPW 89
Query: 246 YPYDQPESKRNFNEPINARQEIFRGDRYDISMRPRFSLLHQWTWFLGTLGGIFALYFYLE 425
Y +DQP + N+ EP++ +++ +R D S P S G L + + + +
Sbjct: 90 YSWDQPGLRLNWGEPMHWHLDMYNRNRVDTSPTP-VSWHVMCMQLFGFLAFMIFMCWVGD 148
Query: 426 DYKFGRPVTVKQYP 467
Y +PV KQYP
Sbjct: 149 VYPVYQPVGPKQYP 162
>AL133352-4|CAH73564.1| 172|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 beta subcomplex, 8, 19kDa protein.
Length = 172
Score = 79.0 bits (186), Expect = 1e-14
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +3
Query: 69 NHWNYQYKPGPYPKTPEERAAAAKKYGLTLXXXXXX-XXXXXXXDYPKLPEIGDDSKDPY 245
+H PGPYP+TPEERAAAAKKY + + DYPKLP+ +DP+
Sbjct: 30 SHMTKDMFPGPYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQHERDPW 89
Query: 246 YPYDQPESKRNFNEPINARQEIFRGDRYDISMRP 347
Y +DQP + N+ EP++ +++ +R D S P
Sbjct: 90 YSWDQPGLRLNWGEPMHWHLDMYNRNRVDTSPTP 123
>Y18944-1|CAB46274.1| 43|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 beta subcomplex, 8 protein.
Length = 43
Score = 44.4 bits (100), Expect = 3e-04
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +3
Query: 69 NHWNYQYKPGPYPKTPEERAAAAKKYGL 152
+H PGPYP+TPEERAAAAKKY +
Sbjct: 2 SHMTKDMFPGPYPRTPEERAAAAKKYNM 29
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,387,683
Number of Sequences: 237096
Number of extensions: 1764257
Number of successful extensions: 3150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3139
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -