Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N24
         (620 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-922|AAZ52496.1|  175|Drosophila melanogaster CG3192-PB,...   130   1e-30
AE014298-921|AAF46185.1|  175|Drosophila melanogaster CG3192-PA,...   130   1e-30
AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed...    29   3.8  
X15707-1|CAA33737.1|  267|Drosophila melanogaster protein ( Dros...    29   6.7  

>AE014298-922|AAZ52496.1|  175|Drosophila melanogaster CG3192-PB,
           isoform B protein.
          Length = 175

 Score =  130 bits (315), Expect = 1e-30
 Identities = 66/142 (46%), Positives = 86/142 (60%), Gaps = 3/142 (2%)
 Frame = +3

Query: 75  WNYQYKPGPYPKTPEERAAAAKKYGLTLXXXXXXXXXXXXX-DYPKLPE-IGDDSKDPYY 248
           WN  YKPGPYP+T +ER AAAKKY L                DYPKL   +G ++KD YY
Sbjct: 32  WNKDYKPGPYPQTEKERLAAAKKYYLLPEEYKPYADDGLGYGDYPKLGYGLGVEAKDSYY 91

Query: 249 PYDQPESKRNFNEPINARQEIFRGDRYDISMRPRFSLLHQWTWFLGTLGGIFALYFYLED 428
           P+D PE KRN +EPI+A  +++  DR+  +  PR+S  + +  FLG + G  ALY++L+D
Sbjct: 92  PWDYPEHKRNQHEPISADHDLYSEDRWSQAEPPRYSNAYYFACFLGVMSGCLALYYWLDD 151

Query: 429 YKFGRPVTVKQYPRDG-PHYLF 491
            K  RPV  KQYP  G  HY F
Sbjct: 152 KKMYRPVAAKQYPSPGVKHYTF 173


>AE014298-921|AAF46185.1|  175|Drosophila melanogaster CG3192-PA,
           isoform A protein.
          Length = 175

 Score =  130 bits (315), Expect = 1e-30
 Identities = 66/142 (46%), Positives = 86/142 (60%), Gaps = 3/142 (2%)
 Frame = +3

Query: 75  WNYQYKPGPYPKTPEERAAAAKKYGLTLXXXXXXXXXXXXX-DYPKLPE-IGDDSKDPYY 248
           WN  YKPGPYP+T +ER AAAKKY L                DYPKL   +G ++KD YY
Sbjct: 32  WNKDYKPGPYPQTEKERLAAAKKYYLLPEEYKPYADDGLGYGDYPKLGYGLGVEAKDSYY 91

Query: 249 PYDQPESKRNFNEPINARQEIFRGDRYDISMRPRFSLLHQWTWFLGTLGGIFALYFYLED 428
           P+D PE KRN +EPI+A  +++  DR+  +  PR+S  + +  FLG + G  ALY++L+D
Sbjct: 92  PWDYPEHKRNQHEPISADHDLYSEDRWSQAEPPRYSNAYYFACFLGVMSGCLALYYWLDD 151

Query: 429 YKFGRPVTVKQYPRDG-PHYLF 491
            K  RPV  KQYP  G  HY F
Sbjct: 152 KKMYRPVAAKQYPSPGVKHYTF 173


>AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed
           DNA polymerase protein.
          Length = 1013

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 341 HTDIITVTTEYFLSCINRFIKIPL*LRLIVRVI 243
           H DI +   +YFL+C+++F K  +   ++ R I
Sbjct: 789 HIDIFSTDKKYFLTCVDKFSKFAMVQPILSRTI 821


>X15707-1|CAA33737.1|  267|Drosophila melanogaster protein (
           Drosophila melanogasterDNA sequence (isolate CBS) for
           18S rRNA  (3'end), 5.8SrRNA and 28S rRNA (5'end).  ).
          Length = 267

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 341 HTDIITVTTEYFLSCINRFIKIPL 270
           H DI +   +YFL+CI++F K  +
Sbjct: 67  HIDIFSTDKKYFLTCIDKFSKFAI 90


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,817,224
Number of Sequences: 53049
Number of extensions: 541751
Number of successful extensions: 1218
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2559155400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)