Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N23
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna (prolife...   142   2e-34
AL132862-22|CAB70233.1|  169|Caenorhabditis elegans Hypothetical...    32   0.35 
AL032639-10|CAA21634.1|  108|Caenorhabditis elegans Hypothetical...    31   0.80 

>AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna
           (proliferating cell nuclearantigen) homolog protein 1
           protein.
          Length = 229

 Score =  142 bits (344), Expect = 2e-34
 Identities = 63/133 (47%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
 Frame = +3

Query: 192 IQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTMKAQD 371
           + LQAMD+SHV+LVSL L    FD YRCDR I++G++L +MSK LKCA + DT  +K ++
Sbjct: 1   MSLQAMDSSHVALVSLKLEVGLFDTYRCDRTINLGLSLANMSKALKCANNDDTCMLKYEE 60

Query: 372 N-ADTVTFAFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRLPSVEFARICRDLSQ 548
           N  D++ F F  P ++K  D  +K+M++D EHLGIP+ +Y+    +P+ EF + C+DLS 
Sbjct: 61  NEGDSIIFTFADPKRDKTQDVTVKMMDIDSEHLGIPDQDYAVVCEMPAGEFQKTCKDLST 120

Query: 549 FGESMVISCTKEG 587
           F +S+ I+ TK G
Sbjct: 121 FSDSLNITATKAG 133


>AL132862-22|CAB70233.1|  169|Caenorhabditis elegans Hypothetical
           protein Y73F8A.27 protein.
          Length = 169

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
 Frame = +3

Query: 225 SLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTMKAQDNADTVTFAFES 404
           S++ L +RA GF ++  +       N   M+  ++  GD +    K++D    +T+    
Sbjct: 3   SVLRLAMRAKGFSRFLAETQAFPVKNRHFMTSSVRKTGDFEYEDPKSEDEVVNITYVLRD 62

Query: 405 PNQE----KVSDYEMKLMN-LDLEHLGIPETEYSCT 497
             +     KV D  M L +  D+E  G  E   +C+
Sbjct: 63  GTERKIRGKVGDNVMFLAHRYDIEMEGACEASLACS 98


>AL032639-10|CAA21634.1|  108|Caenorhabditis elegans Hypothetical
           protein Y38F1A.9 protein.
          Length = 108

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 22/88 (25%), Positives = 34/88 (38%)
 Frame = +3

Query: 234 SLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTMKAQDNADTVTFAFESPNQ 413
           SL +  DG   + C  N +    +    K  +  GD+    +K      TVT   ++P Q
Sbjct: 12  SLIIAPDGSVLFECICNANPQPTVKWFLKDKELTGDRYVSKIKKMVGKFTVTLHIKNPTQ 71

Query: 414 EKVSDYEMKLMNLDLEHLGIPETEYSCT 497
           E    Y++   N    H    +  Y CT
Sbjct: 72  EDQGVYKVTATNTHGSHSVEQQYIYKCT 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,399,758
Number of Sequences: 27780
Number of extensions: 243275
Number of successful extensions: 597
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)