Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N21
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356...    27   5.7  
02_04_0195 + 20830849-20830950,20831498-20831690,20831800-208319...    27   7.5  
11_01_0518 + 4057428-4057538,4059609-4059801,4059921-4060025,406...    27   10.0 
04_01_0196 + 2287911-2288278,2289187-2289838                           27   10.0 

>01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,
            3560853-3561491,3562154-3562450,3562553-3563407,
            3564363-3564545,3565041-3565118,3565762-3565974,
            3566075-3566238,3566357-3566445,3566761-3566891,
            3566980-3567148,3567255-3567327,3567525-3567606,
            3567677-3567808,3568743-3568818,3568965-3569065,
            3569446-3569636,3569738-3569912,3570604-3570854,
            3571327-3571603,3572184-3572267,3572496-3573206
          Length = 1867

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 323  SILKIKLKCLFVMSKYF*SLERLDRF*RDFFEYITEVTPGTLEY 454
            ++  I L+ L  + K F SL RLD+   D  EY+   T   L+Y
Sbjct: 1536 NLQSILLQYLSTLMKLF-SLSRLDKLSEDLTEYLYSPTSSYLDY 1578


>02_04_0195 +
           20830849-20830950,20831498-20831690,20831800-20831904,
           20832147-20832235,20832316-20832468,20832628-20832762,
           20832849-20833015,20833519-20833613,20833707-20834080,
           20834177-20834599
          Length = 611

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -2

Query: 346 LQFYF*YRCGWNFTILNFYCFLLWITFLIVFLT 248
           ++ YF +   WN+ +   Y F+L +  +++ +T
Sbjct: 458 IEMYFVFTSFWNYKVYYVYGFMLLVFLILIIVT 490


>11_01_0518 +
           4057428-4057538,4059609-4059801,4059921-4060025,
           4060259-4060347,4060424-4060576,4060754-4060888,
           4061241-4061407,4062129-4062223,4062367-4062740,
           4062903-4063176,4063806-4063822
          Length = 570

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -2

Query: 346 LQFYF*YRCGWNFTILNFYCFLLWITFLIVFLT 248
           ++ YF +   WN+ +   Y F+L +  +++ +T
Sbjct: 461 IEMYFVFTSFWNYKVYYVYGFMLLVFVILIIVT 493


>04_01_0196 + 2287911-2288278,2289187-2289838
          Length = 339

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 358 HKQTLQFYF*YRCGWNFTILNFYCFLLWITFLIVFLTY 245
           HK  L+FY     G ++ IL+F C   W     +FL Y
Sbjct: 60  HKNLLKFYGWCIRGHSWNILHFMCGWCWSMEKELFLVY 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,560,017
Number of Sequences: 37544
Number of extensions: 118488
Number of successful extensions: 182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)