Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_N20
(416 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po... 29 0.22
SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces po... 28 0.67
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom... 27 1.2
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 2.0
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An... 26 2.0
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 26 2.7
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 2.7
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 3.6
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 3.6
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 25 4.7
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|... 25 6.2
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 25 6.2
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 25 6.2
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom... 25 6.2
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 24 8.2
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 24 8.2
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 24 8.2
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 24 8.2
>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 412
Score = 29.5 bits (63), Expect = 0.22
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Frame = +3
Query: 195 AMVRRDAPNTILQDLEKHAQDFQKTI------SEQFNAIVNSKNTESLNKALKEGSDSMV 356
A+ +DA T L +L++ T QF A N+K E + +EG D+
Sbjct: 65 ALQGKDAVLTTLNELKELLSQIDATRIRDEKHKRQFEATENAKRKEEIEAQYREGYDTAQ 124
Query: 357 QQVSELSNSLQGA 395
+QVS L L+ A
Sbjct: 125 KQVSSLVRFLRFA 137
>SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 220
Score = 27.9 bits (59), Expect = 0.67
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +3
Query: 213 APNTILQDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQG 392
A + +++ HA+ + T + V +TES N+A+K+ D+ ++ +SE LQ
Sbjct: 159 ATDICVKETALHARHWYNTYI--ISEAVKGSSTESHNQAIKDFRDAKIEVISEKDPILQS 216
Query: 393 AVSV 404
V
Sbjct: 217 VRKV 220
>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 184
Score = 27.1 bits (57), Expect = 1.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 139 VPPISLSDSFRPYVRRLTE 195
V P S D FRP++RRL E
Sbjct: 97 VLPTSKDDEFRPFIRRLPE 115
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 26.2 bits (55), Expect = 2.0
Identities = 11/50 (22%), Positives = 25/50 (50%)
Frame = +1
Query: 52 HRHGRQVLRVVRLRCPREYDDSPSGFPVPVPPISLSDSFRPYVRRLTERW 201
H+ R V RV + + ++ +S + V P+S D + +++ ++W
Sbjct: 1211 HKDKRIVARVTKRKLLQQSGNSEAPVSFEVKPVSFMDGYSNWLKYAKKKW 1260
>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
family |Schizosaccharomyces pombe|chr 2|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 2.0
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 213 APNTILQDLEKHAQD 257
APNTIL+DL +H +D
Sbjct: 227 APNTILEDLMRHDKD 241
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 2.7
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 58 HGRQVLRVVRLRCPREYDDSPSGFPVPVPPISLSDSFR 171
H VLR +C +E+D G P+P +++ + R
Sbjct: 90 HSVHVLRKEGHKCSKEFDPFLHGIPIPQKALNIYEKQR 127
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 2.7
Identities = 15/52 (28%), Positives = 32/52 (61%)
Frame = +3
Query: 234 DLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQ 389
DLEK +D +K + ++ TE+++ +L+EG + ++++ELS+ L+
Sbjct: 1341 DLEKALKDSEKNFLRK-----EAEMTENIH-SLEEGKEETKKEIAELSSRLE 1386
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.4 bits (53), Expect = 3.6
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -2
Query: 214 ASRRTIAP*AYEHTDGTSHLKRSGEPEP-EIQTANRHTHEGNAGEQHE 74
A+ +AP +EH SH + E EP E + + H E + + E
Sbjct: 773 ANTGPVAPPYFEHETEPSHYEEEEEEEPEERREESSHFSESSGNNEFE 820
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 25.4 bits (53), Expect = 3.6
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +3
Query: 219 NTILQDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSL 386
NT+ + + K +Q FQ S +FN + N ++K+L++ + S+ N L
Sbjct: 487 NTVDEAITKQSQTFQLVNSNEFNEV----NANDVHKSLRQNCAKLDFDDSKSKNLL 538
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 4.7
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 264 KTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNS 383
KT+S++ + S+ T SLNKA K+ + + ++ +S S
Sbjct: 164 KTLSKRLLDLALSEKTHSLNKASKKSNKNGDKKRKHVSKS 203
>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 362
Score = 24.6 bits (51), Expect = 6.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -2
Query: 307 FFELTIALNCSLIVFWKSWACFSRSCNIVLGASRRTIAP 191
+ E+T N + +K W C + CN + G ++I P
Sbjct: 247 YIEITSKHNYDIDFKYK-WLCINEKCNKLYGRHSKSINP 284
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 24.6 bits (51), Expect = 6.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 312 ESLNKALKEGSDSMVQQVSELSNSLQGAVSV 404
E + A E S++Q++SEL +QG + V
Sbjct: 79 EDMANAFAEKRRSVLQELSELEEEVQGILGV 109
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 6.2
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Frame = +1
Query: 22 NFASNSHRLRHRHGRQVLRVVRLRCPREYDDSPSGFPVP----VPP 147
N S R RH HGR P +D+P +P VPP
Sbjct: 248 NVDSRPRRERHFHGRSFAHAEHHSVPNMRNDTPGNEALPSHSSVPP 293
>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 24.6 bits (51), Expect = 6.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -2
Query: 304 FELTIALNCSLIVFWKSWACFSRSCNIVLGASRRTI 197
+++++ L L + WKSW S S ++L +S R +
Sbjct: 139 YQISVVLLLCLTMGWKSWT--SASGAVILSSSTRML 172
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 24.2 bits (50), Expect = 8.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 115 SPSGFPVPVPPISLSDSFRPYVRRLTERW 201
SPS P+PP ++ D + RRL W
Sbjct: 213 SPSLSEPPLPPFAIGDLRANWSRRLDRIW 241
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 24.2 bits (50), Expect = 8.2
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 270 ISEQFN-AIVNSKNTESLNKALKEGSDSMVQQVSELSNS 383
I +Q N +I N KNT N + K + + +S +SNS
Sbjct: 483 IPQQSNKSIGNHKNTSVANVSSKVANSKFERNISMMSNS 521
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 24.2 bits (50), Expect = 8.2
Identities = 13/50 (26%), Positives = 18/50 (36%)
Frame = +3
Query: 201 VRRDAPNTILQDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDS 350
V ++ I K DF K I FN + L A+ E S +
Sbjct: 54 VAKERQKKISDPARKFFSDFSKLIDNSFNVFAKKNEGDLLQNAIYELSQA 103
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 24.2 bits (50), Expect = 8.2
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +3
Query: 231 QDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQ 389
Q ++K + +KT+SE + + + N+ LKE + S V + + +L+
Sbjct: 582 QQIDKFSTFIRKTLSETIDNLQLLTSPIVTNQVLKETAISFVGAIETVDKALE 634
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,496,126
Number of Sequences: 5004
Number of extensions: 26473
Number of successful extensions: 131
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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