Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N19
         (353 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51997-3|AAG24066.1|   57|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U55854-2|AAA98011.2| 1427|Caenorhabditis elegans Phospholipase d...    27   5.0  
AB028889-1|BAA97571.1| 1427|Caenorhabditis elegans phospholipase...    27   5.0  
U97002-8|AAB52265.2|  166|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>U51997-3|AAG24066.1|   57|Caenorhabditis elegans Hypothetical
           protein F19G12.4 protein.
          Length = 57

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 227 YRSRLSNQFLFFISDRLRNRSQPQRPWQNNK 135
           YR    N FL+ ++ RL N++      +NN+
Sbjct: 5   YRKEFQNSFLYMVTLRLSNQASSHHTVENNQ 35


>U55854-2|AAA98011.2| 1427|Caenorhabditis elegans Phospholipase d
           protein 1 protein.
          Length = 1427

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -1

Query: 197 FFISDRLRNRS--QPQRPWQNNKTFIVKFRSCDVGFEVMKKLTVTDTQXLFK*N 42
           F + + +R+ S   PQ+ W+  KT +V+  S   G    K  T T T  + K N
Sbjct: 790 FPVDEAIRHSSPADPQKNWKETKTTVVESTSTSGGV-TSKTTTTTTTTRVVKDN 842


>AB028889-1|BAA97571.1| 1427|Caenorhabditis elegans phospholipase D
           protein.
          Length = 1427

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -1

Query: 197 FFISDRLRNRS--QPQRPWQNNKTFIVKFRSCDVGFEVMKKLTVTDTQXLFK*N 42
           F + + +R+ S   PQ+ W+  KT +V+  S   G    K  T T T  + K N
Sbjct: 790 FPVDEAIRHSSPADPQKNWKETKTTVVESTSTSGGV-TSKTTTTTTTTRVVKDN 842


>U97002-8|AAB52265.2|  166|Caenorhabditis elegans Hypothetical
           protein K09H11.6 protein.
          Length = 166

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 336 FFTFGL-RYFFFSFWSRIGFLFLF 268
           FF + + R  F+S WS +GF F+F
Sbjct: 108 FFLYVVTRATFYSVWSDLGFFFVF 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,288,795
Number of Sequences: 27780
Number of extensions: 101669
Number of successful extensions: 195
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)