Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N18
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   1.8  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    26   4.1  
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    25   5.4  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    25   7.2  
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce...    25   9.5  

>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 105 TEAFIRAQMYDFNYSPAVPPVYTWPEGRPSVDM 203
           +++F+  +  DF+ +P  PP   W E   ++DM
Sbjct: 818 SQSFLVNESLDFSSNPKEPPFLPWSEALLNMDM 850


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 115 NASVSNGCGCTDAF--PVAYACSTSFLAIMTE 26
           N + S+   CTD++  P+ ++C+ SFL    E
Sbjct: 68  NGNTSSSLPCTDSYQYPLKHSCTPSFLRKFNE 99


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 452 IDLIQHYFSTSHSLFDSRHSXCPYVSXINTDXKTHY 345
           I+++QH F T       R +  P++  + +   THY
Sbjct: 384 IEIMQHPFFTGIDWDHIRETAAPFIPNLKSITDTHY 419


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 137 VVHLRSDERFSVQRLR 90
           V H+R+DE FS+Q LR
Sbjct: 272 VDHIRNDESFSLQHLR 287


>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 57  HAYATGKASVQPQPLDTEAFIRAQMYD 137
           H Y   ++ VQP  LD+EA I A  +D
Sbjct: 404 HKYQELQSVVQPGSLDSEAGIFASSFD 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,305
Number of Sequences: 5004
Number of extensions: 31599
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)