Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N18
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   4.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   8.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.1  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   8.1  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 476 FCPGYRHFFYHNNYMK 523
           +C  YR  +Y+ NY++
Sbjct: 100 YCNNYRKLYYNINYIE 115


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = +2

Query: 11  TNTELFRHDSQEARRARVRDRESVSATAAVGH*SVHP 121
           TN+   +H+S  +  +   D    S+T  + H  + P
Sbjct: 219 TNSNSIKHESDNSDYSHTTDENRHSSTLDIDHKMLTP 255


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 467 ITNFCPGYRHFFYHNNYMKL 526
           ++N C    +++ +NNY KL
Sbjct: 307 LSNSCNYSNNYYNNNNYKKL 326


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 416 SLFDSRHSXCPYVSXINTDXKTHY 345
           S+F +RH+   Y+S ++ D   ++
Sbjct: 308 SVFTTRHNATCYLSHVDPDVVQYF 331


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 416 SLFDSRHSXCPYVSXINTDXKTHY 345
           S+F +RH+   Y+S ++ D   ++
Sbjct: 14  SVFTTRHNATCYLSHVDPDVVQYF 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,459
Number of Sequences: 438
Number of extensions: 2254
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)