Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N17
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    26   3.7  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   4.9  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    25   4.9  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    25   6.5  

>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
 Frame = +2

Query: 125 SDSIDNNCKYYFYLINRPILVLKC-EQGFVGPKGVRLECNKANYETI--QVIRGPKGAVY 295
           S S D+   YY ++ +  + ++   ++ F G KG+     K   E +  Q +  P G  Y
Sbjct: 68  SPSTDSPDYYYQWVRDSALTIMTILDRFFEGDKGLEPIIVKYMDEMVRLQKVPNPSGDFY 127

Query: 296 FKGQNGKYWHADGESVTCDSDSPQGFHLELR 388
             G     ++ DG S   D   PQ     LR
Sbjct: 128 AGGLGEPKFNVDGTSYDGDWGRPQNDSPALR 158


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 281 KGAVYFKGQNGKYWHADGESVTCDSDSPQGFHLEL 385
           KG    + QN  Y+  DG  V C S+  Q F  +L
Sbjct: 487 KGHANAQSQNRAYFDDDGNYVICGSEDHQVFIWDL 521


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 14  SSNALFELEWQGDGSVAFRANNGKYLMTKRSGHLYANSDSID 139
           S N  F+    GDG+     N+  Y+  K    + ANS ++D
Sbjct: 340 SINIWFDFFTLGDGANYAEINDSSYVFPKVPSIMIANSTNVD 381


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 133 HRXXXXXXXXXXXXTDLGVEVRTRFRRSEGRAVGMQQGQLRDHSGDPRTQG 285
           H+             D+GV V +  RR E  A   + GQ R+H+   RTQG
Sbjct: 326 HKGYVTNMINGASQADIGVLVISA-RRGEFEAGFERGGQTREHAVLARTQG 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,328,236
Number of Sequences: 5004
Number of extensions: 22975
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)