Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N17
         (504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0182 - 21397221-21397575,21397712-21398076,21398510-213986...    32   0.30 

>09_06_0182 -
           21397221-21397575,21397712-21398076,21398510-21398685,
           21398802-21399039,21399627-21400118
          Length = 541

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +2

Query: 41  WQGDGSVAFRANNGKYLMTKRSGH-LYANSDSIDNNCKYYFYLINRPILVLKCEQGF 208
           W G+G  AF    G++ +T +SGH + A++++   +  YY ++ +  +L +    GF
Sbjct: 126 WAGNGE-AFGTGRGEWRLTVQSGHNIEASTNNYSYSVSYYLHVADFVVLCIGRFSGF 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,430,848
Number of Sequences: 37544
Number of extensions: 169193
Number of successful extensions: 486
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)