Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_N17
(504 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74043-10|CAA98542.2| 653|Caenorhabditis elegans Hypothetical p... 31 0.63
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 1.4
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 1.4
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 1.4
AC024882-15|AAF60936.1| 688|Caenorhabditis elegans Hypothetical... 28 4.4
>Z74043-10|CAA98542.2| 653|Caenorhabditis elegans Hypothetical
protein T19B10.3 protein.
Length = 653
Score = 30.7 bits (66), Expect = 0.63
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +2
Query: 110 HLYANSDSIDNNCKYYFYLINRPILVLKCEQGFVGPKGVRLECN-KANYETIQVIRGPKG 286
H+Y N ID + Y+ L +++ C + + +E + +ETI +G
Sbjct: 457 HVYLNGKYIDTLTRRYYNLTRNSVIIEGCLENEENRLFMLVENQGRKTFETINDRKGILS 516
Query: 287 AVYFKGQNGKYWHADGESVTCDSD 358
V+ GQ ++W G + D
Sbjct: 517 DVFMNGQAIQFWTQCGIKLPLQED 540
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +K+ +T+ +RGP G +G DGE + D+
Sbjct: 8055 IGPDGQALPTDKSG-KTVYPVRGPDGTPLSTDASGALIGLDGEPIPTDA 8102
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDSD 358
VGP G L ++ +T+ +RGP G +G DGE + D++
Sbjct: 3284 VGPDGQALPTDETG-KTVYPVRGPDGTPLPTDASGAVMGPDGEPIPTDAN 3332
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDSD 358
+GP G L +++ +T+ +RGP G +G DGE + DS+
Sbjct: 4003 IGPDGQALPTDESG-KTVYPVRGPDGTPLPTDVSGAVIGPDGEVIPTDSN 4051
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDSD 358
+GP G L +++ +T+ +RGP G +G DGE + D++
Sbjct: 4378 IGPDGQALPTDESG-KTVYPVRGPDGTPLPTDASGAVISPDGEVIPTDAN 4426
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +++ +T+ IRGP G +G DGE + D+
Sbjct: 5388 IGPDGQALPTDESG-KTVYPIRGPDGTPLPTDASGAVIGPDGEPIPTDA 5435
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +++ +TI +RGP G +G DGE + D+
Sbjct: 6029 IGPDGQGLPTDESG-KTIYPVRGPDGTPLPTDASGAVIGPDGEPIPTDA 6076
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +++ +T+ +RGP G +G DGE + D+
Sbjct: 6464 IGPDGQALPTDESG-KTVYPVRGPDGTPLPTDASGAVIGLDGEPIPTDA 6511
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +++ +T+ +RGP G +G DGE + D+
Sbjct: 8954 IGPDGQALPTDESG-KTVYPVRGPDGTPLPTDASGAVIGLDGEPIPTDA 9001
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +++ +T+ +RGP G +G DGE + D+
Sbjct: 9099 IGPDGQALPTDESG-KTVYPVRGPDGTPLPTDASGAVIGLDGEPIPTDA 9146
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +++ +T+ IRGP G +G DGE + D+
Sbjct: 10590 IGPDGQALPTDESG-KTVYPIRGPDGTPLPTDASGASIGPDGEPIPTDA 10637
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +K+ +T+ +RGP G +G DGE + D+
Sbjct: 8100 IGPDGQALPTDKSG-KTVYPVRGPDGTPLSTDASGALIGLDGEPIPTDA 8147
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDSD 358
VGP G L ++ +T+ +RGP G +G DGE + D++
Sbjct: 3329 VGPDGQALPTDETG-KTVYPVRGPDGTPLPTDASGAVMGPDGEPIPTDAN 3377
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDSD 358
+GP G L +++ +T+ +RGP G +G DGE + DS+
Sbjct: 4048 IGPDGQALPTDESG-KTVYPVRGPDGTPLPTDVSGAVIGPDGEVIPTDSN 4096
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDSD 358
+GP G L +++ +T+ +RGP G +G DGE + D++
Sbjct: 4423 IGPDGQALPTDESG-KTVYPVRGPDGTPLPTDASGAVISPDGEVIPTDAN 4471
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +++ +T+ IRGP G +G DGE + D+
Sbjct: 5433 IGPDGQALPTDESG-KTVYPIRGPDGTPLPTDASGAVIGPDGEPIPTDA 5480
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +++ +TI +RGP G +G DGE + D+
Sbjct: 6074 IGPDGQGLPTDESG-KTIYPVRGPDGTPLPTDASGAVIGPDGEPIPTDA 6121
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +++ +T+ +RGP G +G DGE + D+
Sbjct: 6509 IGPDGQALPTDESG-KTVYPVRGPDGTPLPTDASGAVIGLDGEPIPTDA 6556
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +++ +T+ +RGP G +G DGE + D+
Sbjct: 8999 IGPDGQALPTDESG-KTVYPVRGPDGTPLPTDASGAVIGLDGEPIPTDA 9046
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +++ +T+ +RGP G +G DGE + D+
Sbjct: 9144 IGPDGQALPTDESG-KTVYPVRGPDGTPLPTDASGAVIGLDGEPIPTDA 9191
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +++ +T+ IRGP G +G DGE + D+
Sbjct: 10635 IGPDGQALPTDESG-KTVYPIRGPDGTPLPTDASGASIGPDGEPIPTDA 10682
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +K+ +T+ +RGP G +G DGE + D+
Sbjct: 8100 IGPDGQALPTDKSG-KTVYPVRGPDGTPLSTDASGALIGLDGEPIPTDA 8147
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDSD 358
VGP G L ++ +T+ +RGP G +G DGE + D++
Sbjct: 3329 VGPDGQALPTDETG-KTVYPVRGPDGTPLPTDASGAVMGPDGEPIPTDAN 3377
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDSD 358
+GP G L +++ +T+ +RGP G +G DGE + DS+
Sbjct: 4048 IGPDGQALPTDESG-KTVYPVRGPDGTPLPTDVSGAVIGPDGEVIPTDSN 4096
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDSD 358
+GP G L +++ +T+ +RGP G +G DGE + D++
Sbjct: 4423 IGPDGQALPTDESG-KTVYPVRGPDGTPLPTDASGAVISPDGEVIPTDAN 4471
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +++ +T+ IRGP G +G DGE + D+
Sbjct: 5433 IGPDGQALPTDESG-KTVYPIRGPDGTPLPTDASGAVIGPDGEPIPTDA 5480
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +++ +TI +RGP G +G DGE + D+
Sbjct: 6074 IGPDGQGLPTDESG-KTIYPVRGPDGTPLPTDASGAVIGPDGEPIPTDA 6121
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +++ +T+ +RGP G +G DGE + D+
Sbjct: 6509 IGPDGQALPTDESG-KTVYPVRGPDGTPLPTDASGAVIGLDGEPIPTDA 6556
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +++ +T+ +RGP G +G DGE + D+
Sbjct: 8999 IGPDGQALPTDESG-KTVYPVRGPDGTPLPTDASGAVIGLDGEPIPTDA 9046
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +++ +T+ +RGP G +G DGE + D+
Sbjct: 9144 IGPDGQALPTDESG-KTVYPVRGPDGTPLPTDASGAVIGLDGEPIPTDA 9191
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 209 VGPKGVRLECNKANYETIQVIRGPKGAVYFKGQNGKYWHADGESVTCDS 355
+GP G L +++ +T+ IRGP G +G DGE + D+
Sbjct: 10635 IGPDGQALPTDESG-KTVYPIRGPDGTPLPTDASGASIGPDGEPIPTDA 10682
>AC024882-15|AAF60936.1| 688|Caenorhabditis elegans Hypothetical
protein Y9C9A.13 protein.
Length = 688
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 53 GSVAFRANNGKYLMTKRSGHLYANSDSIDNNCKYYFY 163
G++ FR NGKY+ + + + SI +NC + Y
Sbjct: 564 GNINFRVRNGKYIFAELAYNASTILFSITSNCSPHSY 600
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,628,942
Number of Sequences: 27780
Number of extensions: 140367
Number of successful extensions: 470
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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