Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N17
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   1.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.3  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   7.3  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   9.6  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 122 NSDSIDNNCKYYFYLIN 172
           N+++ +NNCK  +Y IN
Sbjct: 101 NNNNYNNNCKKLYYNIN 117


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 122 NSDSIDNNCKYYFYLIN 172
           N+++ +NNCK  +Y IN
Sbjct: 101 NNNNYNNNCKKLYYNIN 117


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 122 NSDSIDNNCKYYFYLIN 172
           N+++ +NNCK  +Y IN
Sbjct: 101 NNNNYNNNCKKLYYNIN 117


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 122 NSDSIDNNCKYYFYLIN 172
           N+++ +NNCK  +Y IN
Sbjct: 101 NNNNYNNNCKKLYYNIN 117


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 74  NNGKYLMTKRSGHLYANSDSIDNNCKYYFYLI 169
           NN KY     + +    +++ +NNCK  +Y I
Sbjct: 327 NNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNI 358


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -3

Query: 322 PVLTVLSFEVNSSLGSADHLNGLVVGLVAFQPHALRTDETLFALQHQ 182
           P +++ S  V+  +   DH   ++   V+ Q HA   +  + A Q++
Sbjct: 446 PGVSIESVTVDKLITYFDHFESMLNNGVSIQSHAKAKNTMIKARQYR 492


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -3

Query: 322 PVLTVLSFEVNSSLGSADHLNGLVVGLVAFQPHALRTDETLFALQHQ 182
           P +++ S  V+  +   DH   ++   V+ Q HA   +  + A Q++
Sbjct: 446 PGVSIESVTVDKLITYFDHFESMLNNGVSIQSHAKAKNTMIKARQYR 492


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -3

Query: 322 PVLTVLSFEVNSSLGSADHLNGLVVGLVAFQPHALRTDETLFALQHQ 182
           P +++ S  V+  +   DH   ++   V+ Q HA   +  + A Q++
Sbjct: 72  PGVSIESVTVDKLITYFDHFESMLNNGVSIQSHAKAKNTMIKARQYR 118


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 137 DNNCKYYFYLIN 172
           +NNCK  +Y IN
Sbjct: 101 NNNCKKLYYNIN 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,027
Number of Sequences: 438
Number of extensions: 1878
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)