Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_N16
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334... 45 5e-05
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916 37 0.009
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 37 0.012
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 36 0.021
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 36 0.028
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 33 0.20
11_03_0142 + 10675764-10675991,10676533-10676943 32 0.35
12_01_0794 + 7285100-7285369,7285931-7286338 31 0.61
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 27 7.5
02_01_0107 + 785993-786359,786773-787703,787807-787975,788472-78... 27 7.5
03_02_0464 - 8683232-8684596 27 10.0
02_05_0371 + 28364896-28366182,28366510-28366623,28366861-283671... 27 10.0
>01_06_1796 -
39932487-39932633,39933150-39933201,39933370-39933495,
39933645-39933743,39934039-39934258,39934599-39934764,
39935108-39935161,39935527-39935657,39935747-39935818,
39936524-39936602,39936705-39936783,39936868-39936902,
39936986-39937111
Length = 461
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +2
Query: 179 DPRKSEMAAAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKPGSPAAVNEDEDNSSS 358
D ++ AAQE LP GW K ++G +Y+ N+ T +QW++PG+P + + SS
Sbjct: 176 DSPVGQIKAAQE--LPPGWVEAKDPTSGASYFYNQSTGTTQWDRPGAPLNTMQHQAPPSS 233
Score = 42.3 bits (95), Expect = 2e-04
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 203 AAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 313
A SLPE W+ +STG YY N T+ +QWE P
Sbjct: 229 APPSSSLPENWEEALDQSTGQKYYYNTNTQATQWEPP 265
>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
Length = 234
Score = 37.1 bits (82), Expect = 0.009
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +2
Query: 359 KEVQCSHILVKHKXXXXXXX----XXXXXITRTKEEAIQIIKGYRTEIVNREVGFDEVAR 526
K+++ SHIL+KH+ T+++A + + R +IV E F++VA
Sbjct: 120 KKLRASHILIKHEGSRRKASWRDPEGVAISATTRDDAADLARALREKIVAGERKFEDVAT 179
Query: 527 LYSDCSSA 550
SDC+SA
Sbjct: 180 EESDCNSA 187
>01_03_0256 +
14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 36.7 bits (81), Expect = 0.012
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 173 LNDPRKSEMAAAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 313
L+ R E +LP GW+ R TG ++Y++ T+ + WE P
Sbjct: 510 LSSSRYPEYNGRNPRTLPPGWEERFDSVTGKSFYIDHNTRTTTWEHP 556
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 35.9 bits (79), Expect = 0.021
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +2
Query: 233 WQARKSRSTGMTYYLNKYTKQSQWEKPGSPAAVNEDEDNSS 355
WQ S + G YY NK T+QS WEKP E D S+
Sbjct: 111 WQEHTS-ADGKKYYYNKKTRQSSWEKPAELMTPLERADAST 150
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 260 GMTYYLNKYTKQSQWEKPGSPAAVNEDEDNSSS 358
G YY NK TKQS+W P E + +S+
Sbjct: 160 GRKYYYNKVTKQSKWTIPDELKIARELAEKASN 192
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 35.5 bits (78), Expect = 0.028
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 203 AAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKPGSP 322
A + SLP+ W+ +TG YY N T +Q+EKP P
Sbjct: 13 APDDPSLPKPWRGLVDGTTGYLYYWNPETNITQYEKPLPP 52
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 32.7 bits (71), Expect = 0.20
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 203 AAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKPGSP 322
A + +LP+ W+ +TG Y+ N TK Q+++P +P
Sbjct: 17 APPDPTLPKPWRGLIDGNTGYLYFWNPETKAVQYDRPTAP 56
>11_03_0142 + 10675764-10675991,10676533-10676943
Length = 212
Score = 31.9 bits (69), Expect = 0.35
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 215 DSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 313
D LP W+ +G YYLN+ T + W +P
Sbjct: 63 DPLPMDWEQCLDLHSGRMYYLNRKTMRKSWVRP 95
>12_01_0794 + 7285100-7285369,7285931-7286338
Length = 225
Score = 31.1 bits (67), Expect = 0.61
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 215 DSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 313
D LP W+ +G YYLN+ T + W +P
Sbjct: 77 DPLPLDWEQCLDLQSGRMYYLNRKTLKKSWIRP 109
>08_01_0114 -
900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +1
Query: 64 IIDYYR--ALRKPIGSIRGVHSSFFSSKESWVTNYYHFAKRS 183
+ DY+ ALR G R SS + W ++H+A+RS
Sbjct: 370 LCDYFSICALRTKYGRYRPSQSSLSKRHKGWQRMWWHYAQRS 411
>02_01_0107 +
785993-786359,786773-787703,787807-787975,788472-788588,
788815-788961
Length = 576
Score = 27.5 bits (58), Expect = 7.5
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +2
Query: 176 NDPRKSEMAAA-QEDSLPEGWQARKSRSTGMTYYLNK----YTKQSQWEKPGSPAAVNED 340
+ P K ++ A ++D EGW SRST Y K K+S+ S AA + D
Sbjct: 238 HQPAKKDVGIAWEDDENNEGWLPAVSRSTHRRYLRRKARRDALKESEQSIETSSAAPSID 297
Query: 341 EDNSSSK 361
+D S+
Sbjct: 298 DDKILSE 304
>03_02_0464 - 8683232-8684596
Length = 454
Score = 27.1 bits (57), Expect = 10.0
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +2
Query: 161 ITILLNDPRKSEMAAAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKPGSPAAVNED 340
I+ L P S A E S Q S +T + +YL++ S K G+ A E+
Sbjct: 65 ISPLAFSPSVSSSTVADERSRARRRQV-SSLATSVRFYLHRIFSYSSGAKNGAGAPAAEE 123
Query: 341 EDNSSSKEV 367
ED + + V
Sbjct: 124 EDEAVTTTV 132
>02_05_0371 +
28364896-28366182,28366510-28366623,28366861-28367125,
28367981-28368105
Length = 596
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = -3
Query: 159 ICHPTLLRREE*RMYAADGSYRFAQRTVVINNLKVFLE 46
+CH L R++ + ++DG Y++ V+ +++ F+E
Sbjct: 495 LCHHKLTARDQFLVLSSDGLYQYLSNEEVVLHVENFME 532
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,502,841
Number of Sequences: 37544
Number of extensions: 296960
Number of successful extensions: 690
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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