Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N15
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    81   8e-17
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    28   0.74 
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.0  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.9  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   9.1  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   9.1  
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    25   9.1  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 81.4 bits (192), Expect = 8e-17
 Identities = 39/95 (41%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
 Frame = -2

Query: 525 SPNIEIGSIGPPLRITP--FNPVHIPLLNTIILISSGVTVT*THHALIENNYSQATQSLF 352
           SP  E+G++ PP+ I     +P+ +PLLNT+IL++SG ++T  H++LI  N   A + L+
Sbjct: 117 SPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLY 176

Query: 351 ITITLGIYFTILQAYEYLEAPFTIAR*YLWINFFY 247
           +TI L   F   QAYEY  APFTI+      +F++
Sbjct: 177 MTIALSFLFLGGQAYEYWNAPFTISDSVYGASFYF 211



 Score = 32.7 bits (71), Expect = 0.034
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -1

Query: 208 GTLFLLICFLRXXXXXXXXXXXXXFEAAA*Y*HFVDVV*LFLYISIY 68
           GT+ LL+                 FE    Y HF DVV LFLY++IY
Sbjct: 223 GTILLLVATYNIYTYHLTNTHHNGFECGIYYWHFCDVVWLFLYLTIY 269



 Score = 30.7 bits (66), Expect = 0.14
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 275 DSIYGSTFFMATGFHG 228
           DS+YG++F+ ATG HG
Sbjct: 202 DSVYGASFYFATGLHG 217


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 28.3 bits (60), Expect = 0.74
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +1

Query: 76  KYKEIIILHLQSVNIMQ---LLQIQSDDYL--RNDLSYDVKSKLIKIMFXXNY 219
           KY+EII+ H Q    MQ   LL+I S D L  +  LSY   +++  +++   Y
Sbjct: 238 KYEEIIVPHAQRAPQMQGEKLLEISSMDILCRKTFLSYQTLNRIQSLVYPIAY 290


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 331 LFHNSSSL*IFRSSFYYCKIVSMDQLFLW-LLDFMALQCNYXGTLFLLICF 182
           L+H SS + +   S +    V++  LFL  L D +  +  Y G+L + +CF
Sbjct: 111 LWHLSSQVSLLGQSMFVLG-VALGPLFLGPLSDLLGRKLVYIGSLIIYVCF 160


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +1

Query: 79  YKEIIILHLQSVNIMQLLQIQSDDYLRNDLSYDVKSKLIKIMF 207
           Y  I ILH QS++ ++ +++ SD++L   + +D +  L  I F
Sbjct: 304 YMLIKILHFQSISKIEHIELISDNFLL--IQHDSQLSLWDITF 344


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 289 FYYCKIVSMDQLFLWLLDFMALQCN 215
           FY CK++S+DQ++  + D    Q N
Sbjct: 773 FYGCKLLSVDQIWAVVSDVYEAQDN 797


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = +1

Query: 22  SRVXXXXXXIINYLISK*KYKEIIILHLQSVNIMQLLQIQSDDYLRNDLSYDVKSK 189
           +R+       + Y  SK  Y+E+I  ++ +VN+ +      ++Y  N  S+D++ +
Sbjct: 318 ARIYNTLLKYMRYQYSKRGYQEVITPNMYNVNLWK-TSGHWNNYSENMFSFDIEKE 372


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = -2

Query: 390 IENNYSQATQSLFITITLGIYFTILQAYEYLEAP 289
           +  +YS  +  L++ +  G+Y + L++Y+    P
Sbjct: 8   LSRSYSTTSPRLYVDVVQGLYISSLKSYKPKAVP 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,480,813
Number of Sequences: 5004
Number of extensions: 23976
Number of successful extensions: 73
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)