Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N15
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099920-4|AAK29844.2|  363|Caenorhabditis elegans Serpentine re...    29   1.5  
AF003151-11|AAO61426.1|  402|Caenorhabditis elegans Hypothetical...    27   8.2  
AF003151-10|AAK18913.2|  477|Caenorhabditis elegans Hypothetical...    27   8.2  

>AF099920-4|AAK29844.2|  363|Caenorhabditis elegans Serpentine
           receptor, class w protein95 protein.
          Length = 363

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
 Frame = -2

Query: 465 VHIPLLNTIILISSGVTVT*THHALIENNYSQATQSLFITITLGI------YFTILQAYE 304
           VH  ++  I++ S G+  T  H  ++  N    +  + I I + I      + +I+  Y 
Sbjct: 37  VHPSIIINIVISSIGIFTTSFHLFVLSRNSMLKSSVILIMIGIAICDILVMFVSIIYNYL 96

Query: 303 YLEAPFTI--AR*YLWINFFYGYWIS 232
           YL   F +        ++FFY YWI+
Sbjct: 97  YLILEFNVKPCEPPAPLSFFYMYWIN 122


>AF003151-11|AAO61426.1|  402|Caenorhabditis elegans Hypothetical
           protein D1007.5b protein.
          Length = 402

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = -2

Query: 495 PPLRITPFNPVHIPLLNTIILISSGVTVT*THHALIENNYSQATQSLFITITLGIYFTIL 316
           PP R  P  P   P +   I  +SGVT++  H    +  ++Q    LF   TL +Y  + 
Sbjct: 2   PPRRRVPAPPPQAPSVPASIPRASGVTLS-VHPIWPDIQFTQG--ELFFECTLFLYSVLA 58

Query: 315 QAYEYL 298
              +YL
Sbjct: 59  LFLQYL 64


>AF003151-10|AAK18913.2|  477|Caenorhabditis elegans Hypothetical
           protein D1007.5a protein.
          Length = 477

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = -2

Query: 495 PPLRITPFNPVHIPLLNTIILISSGVTVT*THHALIENNYSQATQSLFITITLGIYFTIL 316
           PP R  P  P   P +   I  +SGVT++  H    +  ++Q    LF   TL +Y  + 
Sbjct: 2   PPRRRVPAPPPQAPSVPASIPRASGVTLS-VHPIWPDIQFTQG--ELFFECTLFLYSVLA 58

Query: 315 QAYEYL 298
              +YL
Sbjct: 59  LFLQYL 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,891,409
Number of Sequences: 27780
Number of extensions: 125537
Number of successful extensions: 278
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)