Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N14
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.21 
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    29   0.63 
SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac...    27   2.5  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    26   3.4  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    26   3.4  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   7.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 19/48 (39%), Positives = 21/48 (43%)
 Frame = -1

Query: 548 LPLFRQPSLPKGALAPRTRRVTLPSGQPLVAGLPHREDLPLFAVCSRP 405
           LP    PSLP GA A      + P   PL AG+P    LP  A    P
Sbjct: 431 LPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 565 PMPTLFCHSF-ANLRSPKELL-PLAHVVSLSHQDSPSWLVFPIE 440
           P   +FC    A L   K+ +  + H ++ SH DS ++ VFPIE
Sbjct: 186 PCTEVFCEVHDAELNDGKDCVHAIPHGLTYSHTDSSTYKVFPIE 229


>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 449 PHREDLPLFAVCSRP 405
           PH+EDL L  +CS+P
Sbjct: 265 PHKEDLTLVEMCSKP 279


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query: 320 DFLKLLFNQCIFAI--MFLKCFLGLSFMKMM 406
           DFL   F +C+FA   +F+   L LSF+ ++
Sbjct: 13  DFLNRNFKKCLFACISIFIFALLALSFLSLL 43


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 210 YNIINY-IFLLLAKHTYIHIILTNIRVHLLYR*RGVAYFPHPSFLFVFM 67
           Y + NY +FL+     +IH IL ++    + +   V  + +  FLF+ M
Sbjct: 180 YEVQNYQLFLVSIAIQFIHFILASMPTKYIAKLNSVGTYLNTLFLFISM 228


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 497  TRRVTLPSGQPLVAGLPHREDLPLFAVCSR 408
            T   TL    PL AGLP   DLP + + SR
Sbjct: 1300 TSFATLVKLVPLEAGLPDPPDLPQYLLDSR 1329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,823
Number of Sequences: 5004
Number of extensions: 53107
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)