Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N14
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68296-2|CAA92592.1|  297|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z68105-4|CAA92120.2|  304|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U80847-2|AAB37982.2|  475|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z68296-2|CAA92592.1|  297|Caenorhabditis elegans Hypothetical
           protein C46C2.3 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 183 LLAKHTYIHIILTNIRVHLLYR*RGVAYFPHPSFLFVFMKSNNN 52
           +LA H   +I   ++   L    + +AYFPHP  L   +K  N+
Sbjct: 108 VLASHWRSYIKTLDVAARLEEYGKALAYFPHPMLLVDAVKLEND 151


>Z68105-4|CAA92120.2|  304|Caenorhabditis elegans Hypothetical
           protein F13E6.5 protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 332 LLFNQCIFAIMFLKCFLG 385
           L++  C FA+ FLKC++G
Sbjct: 134 LMYAACTFAMEFLKCYVG 151


>U80847-2|AAB37982.2|  475|Caenorhabditis elegans Hypothetical
           protein C17H11.1 protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 190 YVIYYIVK*EVFLIAVPHRLPTPCLRLQIHLHWYNVIIM*FYV 318
           Y  + +     FLI+ PH+ PTP  R Q     Y ++ + F +
Sbjct: 138 YCSFLLTLERYFLISRPHQKPTPFPREQARRRIYTMLALSFLI 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,887,192
Number of Sequences: 27780
Number of extensions: 310184
Number of successful extensions: 713
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)