Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_N12
(337 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 28 0.44
SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar... 27 0.77
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 27 1.0
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 26 1.8
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 26 1.8
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 25 2.3
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 25 3.1
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 3.1
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 24 5.4
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 7.1
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family... 24 7.1
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 23 9.4
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.9 bits (59), Expect = 0.44
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 172 TYVSKAEVFYRNKNPKYLPFTY 107
T+ SK + +RNK+ KY PF +
Sbjct: 533 TFTSKLDALWRNKSLKYKPFKF 554
>SPBC1709.16c |||aromatic ring-opening dioxygenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 0.77
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 145 KILPLYLHKYFSKCHPK 195
K+L L LH YF K HP+
Sbjct: 232 KLLGLQLHPYFRKAHPR 248
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 26.6 bits (56), Expect = 1.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 124 YLPFTYFY*IPKPSCRFLQPGGS 56
Y PFTY + K SCR L+ GS
Sbjct: 687 YSPFTYMTTLTKSSCRALELKGS 709
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 1.8
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 139 NKNPKYLPFTYFY*IPKPSCRFLQPGGSTSLERRHRGAPAVPF 11
N NP Y+P PKP+ R + G T RR + PF
Sbjct: 10 NSNPLYIPNPNVEPTPKPTKRRTKTGCLTCRRRRIKCDETKPF 52
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 25.8 bits (54), Expect = 1.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 202 KNPRKNHSLDVWEQT*KWVL*VYXELLRKARTFFFNVFDL 321
++PR++ +L +T WVL + LL A FFF V DL
Sbjct: 609 EHPRRSFTLLFPSKT-TWVLFLNLTLLNFASFFFFMVLDL 647
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 2.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 225 IGRVGTNLKVGIVGVXRI 278
+GR G +LK+GIVG+ I
Sbjct: 39 LGRPGNHLKIGIVGMPNI 56
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 3.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 228 GRVGTNLKVGIVGVXRI 278
GR G NLK GIVG+ +
Sbjct: 15 GRPGNNLKTGIVGMPNV 31
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.0 bits (52), Expect = 3.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 288 FAQQFGVHLQYPLLSLFPHVQ*VVFSRVLQPFWV 187
FA QFG ++ L + VF +L FWV
Sbjct: 850 FADQFGNYVVQTCLKFGAPMNDFVFEAILNQFWV 883
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 159 KRKYFTGTRTQSIYRLLIFIKSQNPRADSCS 67
+RKYF G R Q I + +KS++ + SC+
Sbjct: 1880 ERKYFNGLRKQEID---VKLKSRSDKEKSCT 1907
>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 23.8 bits (49), Expect = 7.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2
Query: 257 YCRCTPNCCAKLEHFSL 307
+C C +CCA + H+ L
Sbjct: 13 FCPCFLSCCAFMSHWKL 29
>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 23.8 bits (49), Expect = 7.1
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -1
Query: 184 ILKNTYVSKAEVFYRNKNPKYLPFTYFY*IP 92
I++N Y +K+ FY +++P F+ +P
Sbjct: 240 IIQNLYTNKSGRFYYPFYARFMPLLRFFPLP 270
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 121 DTLGSCSCKILPLYLHKYFSKCHPK 195
D + +C ++LP L+ YFS P+
Sbjct: 30 DWIDACHYRVLPACLNIYFSNLLPE 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,453,090
Number of Sequences: 5004
Number of extensions: 27778
Number of successful extensions: 52
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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