Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N12
         (337 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0615 - 22761375-22761760,22762218-22765026                       27   2.9  
05_05_0087 - 22291732-22292029,22292967-22293034,22293640-222937...    27   2.9  
11_06_0554 - 24930437-24930552,24930878-24931079,24931164-249312...    26   8.7  

>06_03_0615 - 22761375-22761760,22762218-22765026
          Length = 1064

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +1

Query: 85  RVLGFNKNK*TVDTLGSCSCKILPLYLHKYFSKCHPKRLKNPRKNHSLDVWE 240
           ++LG  +++  V  LG CS K + L L+ Y    + ++L   + N SLD W+
Sbjct: 822 QILGHIRHRNIVKLLGYCSNKYVKLLLYNYIPNGNLQQLL--KDNRSLD-WD 870


>05_05_0087 -
           22291732-22292029,22292967-22293034,22293640-22293723,
           22295967-22296010,22296210-22296300,22296452-22296634,
           22297594-22297637,22298122-22298355,22298452-22298712,
           22298790-22298915,22298993-22299077,22299171-22299244,
           22299988-22300186
          Length = 596

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -1

Query: 169 YVSKAEVFYRNKNPKYLPFTYFY*IPKPSCRFLQPGGSTSLERRHRGAPAVPFSE 5
           ++ KA V YR K  +      F+  P PS  F  PG S   +++ + A +V FS+
Sbjct: 513 FIYKAIVQYR-KEGQVSVGDLFFDEPSPSSYFRLPGDSGRYQQQQQAAMSVLFSQ 566


>11_06_0554 -
          24930437-24930552,24930878-24931079,24931164-24931269,
          24931357-24931599,24932398-24932484,24932695-24932825,
          24933177-24933183,24933695-24933789
          Length = 328

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 64 GGSTSLERRHRGAPAVPFSE 5
          GG     RRHR APA P  E
Sbjct: 2  GGDARCHRRHRAAPANPSPE 21


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,721,627
Number of Sequences: 37544
Number of extensions: 188059
Number of successful extensions: 407
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)