Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N12
         (337 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB058685-1|BAB47411.1|  545|Homo sapiens KIAA1782 protein protein.     31   1.2  
BC091522-1|AAH91522.1|  396|Homo sapiens Obg-like ATPase 1 protein.    29   3.6  
BC029376-1|AAH29376.1|  396|Homo sapiens Obg-like ATPase 1 protein.    29   3.6  
BC013925-1|AAH13925.1|  278|Homo sapiens GTPBP9 protein protein.       29   3.6  
BC012842-1|AAH12842.1|  396|Homo sapiens GTP-binding protein 9 (...    29   3.6  
AL136546-1|CAB66481.1|  396|Homo sapiens hypothetical protein pr...    29   3.6  
AF134478-1|AAP97255.1|  396|Homo sapiens GTP-binding protein pro...    29   3.6  
AC013467-1|AAY14779.1|  183|Homo sapiens unknown protein.              29   3.6  
AK027523-1|BAB55174.1|  396|Homo sapiens protein ( Homo sapiens ...    29   4.7  

>AB058685-1|BAB47411.1|  545|Homo sapiens KIAA1782 protein
          protein.
          Length = 545

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 88 PSCRFLQPGGSTSLERRHRGAPAVP 14
          PSC  LQ  G +SLE+   GAP  P
Sbjct: 14 PSCSLLQGSGDSSLEKEFLGAPVGP 38


>BC091522-1|AAH91522.1|  396|Homo sapiens Obg-like ATPase 1 protein.
          Length = 396

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 222 LIGRVGTNLKVGIVGVXRI 278
           +IGR GT+LK+GIVG+  +
Sbjct: 15  IIGRFGTSLKIGIVGLPNV 33


>BC029376-1|AAH29376.1|  396|Homo sapiens Obg-like ATPase 1 protein.
          Length = 396

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 222 LIGRVGTNLKVGIVGVXRI 278
           +IGR GT+LK+GIVG+  +
Sbjct: 15  IIGRFGTSLKIGIVGLPNV 33


>BC013925-1|AAH13925.1|  278|Homo sapiens GTPBP9 protein protein.
          Length = 278

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 222 LIGRVGTNLKVGIVGVXRI 278
           +IGR GT+LK+GIVG+  +
Sbjct: 15  IIGRFGTSLKIGIVGLPNV 33


>BC012842-1|AAH12842.1|  396|Homo sapiens GTP-binding protein 9
           (putative) protein.
          Length = 396

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 222 LIGRVGTNLKVGIVGVXRI 278
           +IGR GT+LK+GIVG+  +
Sbjct: 15  IIGRFGTSLKIGIVGLPNV 33


>AL136546-1|CAB66481.1|  396|Homo sapiens hypothetical protein
           protein.
          Length = 396

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 222 LIGRVGTNLKVGIVGVXRI 278
           +IGR GT+LK+GIVG+  +
Sbjct: 15  IIGRFGTSLKIGIVGLPNV 33


>AF134478-1|AAP97255.1|  396|Homo sapiens GTP-binding protein
           protein.
          Length = 396

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 222 LIGRVGTNLKVGIVGVXRI 278
           +IGR GT+LK+GIVG+  +
Sbjct: 15  IIGRFGTSLKIGIVGLPNV 33


>AC013467-1|AAY14779.1|  183|Homo sapiens unknown protein.
          Length = 183

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 222 LIGRVGTNLKVGIVGVXRI 278
           +IGR GT+LK+GIVG+  +
Sbjct: 15  IIGRFGTSLKIGIVGLPNV 33


>AK027523-1|BAB55174.1|  396|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14617 fis, clone NT2RP1001410, moderately
           similar to PUTATIVE GTP-BINDING PROTEIN W08E3.3. ).
          Length = 396

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/16 (68%), Positives = 15/16 (93%)
 Frame = +3

Query: 222 LIGRVGTNLKVGIVGV 269
           +IGR GT+LK+GIVG+
Sbjct: 15  IIGRFGTSLKIGIVGL 30


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,090,727
Number of Sequences: 237096
Number of extensions: 1079156
Number of successful extensions: 2069
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2069
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1794632842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)