Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N12
         (337 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92773-1|CAB07131.1|  395|Caenorhabditis elegans Hypothetical pr...    32   0.12 
Z69383-10|CAM06587.1|  222|Caenorhabditis elegans Hypothetical p...    28   1.4  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z81041-6|CAB02788.1|  336|Caenorhabditis elegans Hypothetical pr...    26   7.7  
AL021472-6|CAK55193.1|  290|Caenorhabditis elegans Hypothetical ...    26   7.7  
AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3...    26   7.7  

>Z92773-1|CAB07131.1|  395|Caenorhabditis elegans Hypothetical
           protein W08E3.3 protein.
          Length = 395

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +3

Query: 222 LIGRVGTNLKVGIVGVXRI 278
           LIGR+GTNLKVGI+G+  +
Sbjct: 14  LIGRLGTNLKVGILGLPNV 32


>Z69383-10|CAM06587.1|  222|Caenorhabditis elegans Hypothetical
           protein F13E9.14 protein.
          Length = 222

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 155 RFTYISIFQNATQKG*RTREKTTHWTCGNKLKSGYCRCTPNCCAKLE 295
           R  Y++I  N+T       E++T W   N +   Y   T N  AKLE
Sbjct: 86  RREYMAIVTNSTLTISEIEEQSTTWAETNGVSEQYSEFTANVTAKLE 132


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +2

Query: 233 CGNKLKSGYCRCTPNCCAKLEHFSL-MC 313
           C  K   G  +C   CC + EHF L MC
Sbjct: 559 CRKKKSCGMHKCQEVCCIQDEHFCLQMC 586


>Z81041-6|CAB02788.1|  336|Caenorhabditis elegans Hypothetical
           protein C27A7.7 protein.
          Length = 336

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +1

Query: 133 SCSCKILPL-YLHKYFSKCHPKRLKNPRKNHSLDVWEQT*KWVL*VYXELLRKARTFFFN 309
           S S  +L L ++++Y + C+PKRL     +H  D      KW+L +   +  +   +FF+
Sbjct: 101 SLSYGVLELHFIYRYVALCYPKRL-----SHFGDP-----KWILIMISAVFGQGLLWFFS 150

Query: 310 VFDL 321
           V+ L
Sbjct: 151 VYFL 154


>AL021472-6|CAK55193.1|  290|Caenorhabditis elegans Hypothetical
           protein Y17D7B.8 protein.
          Length = 290

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 89  FWDLIKISKR*ILWVLVPVKYFRFTYISIFQNATQKG*RTREKTTHWT 232
           FW L  +S   IL +LVP  Y +   + I+ + T  G  T   TT  T
Sbjct: 3   FWSLFFLSFYLILELLVPKAYCQTRMVLIYGSVTSSG--TSTSTTFKT 48


>AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3
           protein.
          Length = 689

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 50  TSGSPGLQESARGFWDLIKISKR*ILWVLVPVKYFRFTYIS 172
           +SG+P +Q + R    L+   ++  L++  PV Y RF  IS
Sbjct: 335 SSGTPAIQCTHRQNLGLLYPMEKGFLFIQKPVMYIRFEEIS 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,173,429
Number of Sequences: 27780
Number of extensions: 162971
Number of successful extensions: 385
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)