Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_N11
(542 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 202 2e-53
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 202 3e-53
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 2.4
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ... 26 3.1
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 25 5.5
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 25 7.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 9.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 202 bits (494), Expect = 2e-53
Identities = 94/155 (60%), Positives = 110/155 (70%)
Frame = +3
Query: 78 LSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAG 257
++ ARP VS+YS K V+ ++ LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 258 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 437
HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 60 HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119
Query: 438 XXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVV 542
ARGH +E+IPE+PLVV
Sbjct: 120 KRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVV 154
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 202 bits (493), Expect = 3e-53
Identities = 94/155 (60%), Positives = 110/155 (70%)
Frame = +3
Query: 78 LSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAG 257
++ ARP VS+Y+ K V+ +L LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 258 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 437
HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 60 HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119
Query: 438 XXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVV 542
ARGH +E+IPE+PLVV
Sbjct: 120 KRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVV 154
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 196 SLTRSGLMGALNTNGRGSEAPATTSLF 116
S T SGL GA NTN + + T LF
Sbjct: 593 STTTSGLFGASNTNNQAQTSNFGTGLF 619
>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 201
Score = 26.2 bits (55), Expect = 3.1
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 458 GGHGSTSLP*VHATVPAPPRLGRREHTSAAAHVTECTLPR 339
G H V AT+P PP G R S A + CTLP+
Sbjct: 42 GAHEIPGSTGVFATMPRPPLEGCRWRCSIA--LPNCTLPK 79
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 438 SAVGSRDGASASTAWSARTYVRRGTCYRMHPAQIC 334
S V S ++ + S T+V T Y++ P QIC
Sbjct: 132 STVSSTPVSTIYSGTSGTTFVSSSTTYQVIPTQIC 166
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 515 LNNMPSSLNEGRY-PGRCHGGGHGSTSLP*VHATVPA 408
L N+P +L RY HG HGS S P VP+
Sbjct: 47 LYNLPRTLLNSRYYSNHSHGLVHGSKSPPSSQFLVPS 83
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 376 PPRHMLPNAPCPDLWVPPP 320
PP+ P P P + VPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPP 1717
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 376 PPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSA 269
PP P P P + VPP +TA PVP SA
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPP---PSTAPPVPTPSA 1224
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = -2
Query: 394 VGANIRPPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSA 269
VG PP P P P +PP +A P P A
Sbjct: 1205 VGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEA 1246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,161
Number of Sequences: 5004
Number of extensions: 37528
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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