Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N10
         (276 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical ...    25   5.8  
Z49910-4|CAA90122.2|  173|Caenorhabditis elegans Hypothetical pr...    25   7.7  

>AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical
            protein Y59E9AL.4 protein.
          Length = 1100

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 133  RVVNSQITRAAIVNSLARRS*KSRGSMKNRKRSGERIMVRKVLVKKNL 276
            +V   Q    +I++    R  KSR   KNR+R   +   RKVL  +NL
Sbjct: 1016 KVYKIQFHTTSILSDHETRGRKSR-KKKNRRRKNRQQKRRKVLRNQNL 1062


>Z49910-4|CAA90122.2|  173|Caenorhabditis elegans Hypothetical
           protein F44G4.6 protein.
          Length = 173

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 258 NFPDHDPFSTSFSVLHASSALL 193
           N+  HDPFS SF+ ++   +L+
Sbjct: 31  NYLSHDPFSMSFAFIYILVSLI 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,786,401
Number of Sequences: 27780
Number of extensions: 68910
Number of successful extensions: 162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)