Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N10
         (276 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   1.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   3.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   6.5  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 74  PTFYIFNIIFTVVKFN 121
           P FY+FN+I   +  N
Sbjct: 213 PMFYVFNLILPCILIN 228


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 208 SMKNRKRSGERIMVRKVLVK 267
           S+K+ KRSG  + V   L+K
Sbjct: 56  SLKDEKRSGRPVEVDDDLIK 75


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -3

Query: 121 IKFNNREYYIKYIESWDI 68
           +KF N++  +   E WD+
Sbjct: 548 LKFKNKKLPVFLAEIWDV 565


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,816
Number of Sequences: 438
Number of extensions: 921
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5388717
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)