Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N09
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||...    67   1e-12
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    30   0.15 
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    28   0.79 
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   1.8  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   4.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   4.2  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    25   7.3  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   7.3  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   7.3  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.3  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    25   7.3  
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    24   9.7  

>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 186

 Score = 67.3 bits (157), Expect = 1e-12
 Identities = 42/116 (36%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
 Frame = +2

Query: 95  TPPPSVSWAQRSAR-------VFLTFNV-ECVKPDIKI--ERKTISFKGICEPEKKLHEV 244
           T  P V WAQRS +       ++LT  + + V P I +  E+  I  K         + V
Sbjct: 5   TQIPEVLWAQRSNKDDAEKNVIYLTVLIPDAVDPKINLTPEKLVIDSKSGANAH---YAV 61

Query: 245 VIPLYSQVDPDKSAYINKGRLIEVVLAKENTDEPFWPSLTSDKKKHHWLKVDFNRW 412
            I  +  +D +KS Y   GR I  VL K+   E FWP LT +K + HWL+ DF+RW
Sbjct: 62  QIDFFKDIDVEKSKYSVTGRYIFFVLYKKELQEEFWPRLTKEKLRLHWLRTDFDRW 117


>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 30.3 bits (65), Expect = 0.15
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
 Frame = +2

Query: 116 WAQRSARVFLTFNVECVKPD---IKIERKTISFKGICEPEKKLHEVVIPLYSQVDPDKSA 286
           W+Q S  + +    + VK +   + +E+ T+  +   E       V+ PLY ++ P+KS+
Sbjct: 188 WSQTSFSLNIDIYAKKVKDEDVSLLMEKNTLKIEIKLEDGSIFSLVLDPLYEEIVPEKSS 247

Query: 287 YINKGRLIEVVLAKENTDEPFWPSL 361
           +      +E+ L K+   E  W +L
Sbjct: 248 FKLFSSKVEITLIKK-VSEIKWEAL 271


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 27.9 bits (59), Expect = 0.79
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 254 LYSQVDPDKSAYINKGRLIEVVLAKENTD 340
           LY+ V P KS    KG+ +++V+ +ENT+
Sbjct: 102 LYANVRPVKSLDGAKGKPVDLVIVRENTE 130


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -1

Query: 375  FLSLVRDGQKGSSVFSLANTTSISLPLLIYALLSGSTWEYRXXXXXXXXXXXSHMPLKDI 196
            FL +  +  +  +V      +   LP L Y  LSG+TW +R           S+  LK++
Sbjct: 904  FLDISTNNLQNLAVEKAEKKSLTKLPQLEYLNLSGNTW-FRFSEHEDTNFTKSY--LKNL 960

Query: 195  VFLSIL 178
             FLSI+
Sbjct: 961  KFLSIM 966


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 260 SQVDPDKSAYINKGRLIEVVLAKENTD 340
           +Q++PD+  Y++ G +   V  KE+TD
Sbjct: 78  AQLNPDRILYMSAGAVTAAVPNKEHTD 104


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 80  SSEIITPPPSVSWAQRSARVFLTFNVECVKPDIKIERKTIS 202
           SS + TPPP+ S+       F+T +     P+   E KT S
Sbjct: 686 SSTVSTPPPTTSFPSTFTTSFITSSSLSSIPNNSTEVKTAS 726


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 247 YNFMKFLLWFTYAFEGYCFSFNFDIWFYTFNVK 149
           + F+  +L  TYA  G  +SF   +W Y  ++K
Sbjct: 469 FEFLPLMLLSTYAAWGIFWSFVSLLWLYFTDLK 501


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 330 RILMSLSGHLLQVIKKNTTGSKL--ILIAGK 416
           R+L  L GH ++ ++ N  G  +  +LIA K
Sbjct: 128 RVLTKLKGHTVEAVQWNLNGGNILELLIASK 158


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 203 RILFFFQ-F*YLVLHIQR*TSKILVHFSEPMKLTAEV*LFPMTYLQIILLF 54
           R+LF  Q F   + HI R + K ++ F     + A+  LFP      +LLF
Sbjct: 110 RVLFLIQSFPTRLYHICRNSIKSILQFQNFSNIFAKKNLFPKVSKSDVLLF 160


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 320 LAKENTDEPFWPSLTSD 370
           L K NT++PFW   +SD
Sbjct: 702 LTKLNTEDPFWTKGSSD 718


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 131 ARVFLTFNVECVKPDIKIERKTISFKGI 214
           A V L  NV+  K D K+ RKT+ F+ I
Sbjct: 681 ASVILNRNVDKSKIDPKLIRKTLPFQNI 708


>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 430 TLVFILPAIKINFEPVVFFFITCKRW 353
           TL+  L A K N +  +  FI C++W
Sbjct: 52  TLLRFLRARKFNLQQSLEMFIKCEKW 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,635
Number of Sequences: 5004
Number of extensions: 36978
Number of successful extensions: 96
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)